Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90209 | Canola | cytosol, nucleus, plasma membrane | 81.69 | 79.76 |
| CDX99851 | Canola | mitochondrion | 49.09 | 58.94 |
| AT1G29760.1 | Thale cress | cytosol, nucleus, plasma membrane | 58.75 | 55.51 |
| CDY43679 | Canola | plasma membrane | 36.62 | 52.3 |
| VIT_10s0003g01840.t01 | Wine grape | plasma membrane | 29.58 | 49.66 |
| CDY66765 | Canola | cytosol, peroxisome, plasma membrane | 36.02 | 48.91 |
| KRH59037 | Soybean | cytosol, nucleus, plasma membrane, plastid | 39.44 | 37.62 |
| KRH11077 | Soybean | cytosol, nucleus, peroxisome | 36.82 | 36.17 |
| PGSC0003DMT400073048 | Potato | nucleus | 38.03 | 33.69 |
| EER99253 | Sorghum | plastid | 31.59 | 33.55 |
| Solyc02g071900.2.1 | Tomato | cytosol | 37.42 | 33.16 |
| Os09t0534000-01 | Rice | cytosol, nucleus, plasma membrane, plastid | 30.38 | 33.04 |
| GSMUA_Achr9P24190_001 | Banana | cytosol, peroxisome, plasma membrane | 33.4 | 32.61 |
| Zm00001d021305_P001 | Maize | plastid | 30.18 | 32.47 |
| HORVU5Hr1G082480.1 | Barley | mitochondrion | 28.97 | 31.17 |
| TraesCS5A01G322900.1 | Wheat | cytosol, nucleus, vacuole | 28.37 | 30.39 |
| TraesCS5B01G323400.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 28.17 | 26.72 |
| CDX78692 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 18.91 | 26.4 |
| CDX70695 | Canola | plasma membrane | 18.71 | 25.98 |
| CDY38111 | Canola | plasma membrane | 18.31 | 25.42 |
| CDX85507 | Canola | plasma membrane | 18.31 | 25.42 |
Protein Annotations
| EnsemblPlants:CDY35278 | EnsemblPlantsGene:GSBRNA2T00058220001 | GO:A0A078HEP6 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0019915 | InterPro:Seipin | PANTHER:PTHR21212 | PANTHER:PTHR21212:SF1 | PFAM:PF06775 |
| ProteinID:CDY35278 | ProteinID:CDY35278.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EE8E09 | UniProt:A0A078HEP6 |
| MapMan:5.9.1 | : | : | : | : | : |
Description
BnaC03g59450DBnaC03g59450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HEP6]
Coordinates
chrLK032349:-:142266..144096
Molecular Weight (calculated)
56485.6 Da
IEP (calculated)
5.735
GRAVY (calculated)
-0.195
Length
497 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSSNPTIT HDDELDRFLD APDEFYYDCM PPTRRHSHRQ YSSPSANPSA ATLRRRNHRN SNRSDVETEP SSSSSNGFKL DDVIESTKDL IDLSPPEKDN
101: DFVVTDSEES VDVADSDRVQ EGVSLTEEST VTTVSDDREV DNARSSPPEL HEPNPTDWSL LGYLVGLVFK AIEFQFNLFI SLVKYPPLLL HWCFLFFFDP
201: FSTIRLGRHF ITTVITNKLS WFDDTKRVLN VACKCGWGLF WAVYVGAVLF GLLVLSLMLG GFMINRVADK PFVLKEVLNF DYTKNSPEAF VPITSCDGSC
301: KESNEMLKIR GVRAIPRDHK LEITLSMTVP ESEYNKNLGM FQVRVDFLSA DGQTLNSIRR PCMLRFRSEP IRLVQTFLKM VPLVTGYVSE IQTLSLKLKG
401: FAEKDIPTAC LKVMIEQRAE FRPGAGIPEL YDASLSLESD LPFFKKVIWK WRKTLYVWIS MSLFVMELLF ALVCCRPLVI PRTRSRDRPP SNSPGSG
101: DFVVTDSEES VDVADSDRVQ EGVSLTEEST VTTVSDDREV DNARSSPPEL HEPNPTDWSL LGYLVGLVFK AIEFQFNLFI SLVKYPPLLL HWCFLFFFDP
201: FSTIRLGRHF ITTVITNKLS WFDDTKRVLN VACKCGWGLF WAVYVGAVLF GLLVLSLMLG GFMINRVADK PFVLKEVLNF DYTKNSPEAF VPITSCDGSC
301: KESNEMLKIR GVRAIPRDHK LEITLSMTVP ESEYNKNLGM FQVRVDFLSA DGQTLNSIRR PCMLRFRSEP IRLVQTFLKM VPLVTGYVSE IQTLSLKLKG
401: FAEKDIPTAC LKVMIEQRAE FRPGAGIPEL YDASLSLESD LPFFKKVIWK WRKTLYVWIS MSLFVMELLF ALVCCRPLVI PRTRSRDRPP SNSPGSG
001: MDSESESESN PSTTDEFDRF LDAPDEFYYD CLPIRSNSHQ PSSLLRRRKS AHRRDLISSD IETEPSSSSD GFDVGEKSSY VEKNAELRGD IDTSDVIEST
101: KDSIDLSSEK ENDLDVISSS GNDMDVIDSG RNRVDPFQEE STVTTVSSDD QGDDDYAGSV PQFREPPNST EWSLLGFLVG LVIKAIEFQV SFMTSLLTFP
201: PWLLRNCFLF FFDPFSTIRF GRRFLMARVA GISDMIFGYM NPFRLKDTKQ MLSIVCKFGW GMFWAVYVGI VLFGLLVSSL MIGGYVINRI ADKPFEVKET
301: LNFDYTKNSP EAYVPISSCA GVECEGSCKE SNEMSKIRGL RVIPRDQKLD IILSMTLPES AYNKNLGMFQ VRVDFLSVDG QTIASIRRPC MLRFRSEPIR
401: LVQTFFKVVP LVTGYVSEIQ TLSLKLKGFV EKDIPTACLK IIIEQRAEFR PGAGIPELYD ASLSVESGLP FFRKIIWKWR KTLFVWISMS LFITELLFTL
501: VCCRPLIIPR TQPRDRSPSN PTGVWR
101: KDSIDLSSEK ENDLDVISSS GNDMDVIDSG RNRVDPFQEE STVTTVSSDD QGDDDYAGSV PQFREPPNST EWSLLGFLVG LVIKAIEFQV SFMTSLLTFP
201: PWLLRNCFLF FFDPFSTIRF GRRFLMARVA GISDMIFGYM NPFRLKDTKQ MLSIVCKFGW GMFWAVYVGI VLFGLLVSSL MIGGYVINRI ADKPFEVKET
301: LNFDYTKNSP EAYVPISSCA GVECEGSCKE SNEMSKIRGL RVIPRDQKLD IILSMTLPES AYNKNLGMFQ VRVDFLSVDG QTIASIRRPC MLRFRSEPIR
401: LVQTFFKVVP LVTGYVSEIQ TLSLKLKGFV EKDIPTACLK IIIEQRAEFR PGAGIPELYD ASLSVESGLP FFRKIIWKWR KTLFVWISMS LFITELLFTL
501: VCCRPLIIPR TQPRDRSPSN PTGVWR
Arabidopsis Description
SEI2Seipin-2 [Source:UniProtKB/Swiss-Prot;Acc:F4I340]
SUBAcon: [plasma membrane,nucleus,cytosol]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.