CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
endoplasmic reticulum 2
extracellular 1
golgi 1
plasma membrane 3
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	endoplasmic reticulum, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023566.1-P	Field mustard	plasma membrane	93.3	93.82
CDY38111	Canola	plasma membrane	87.43	87.43
CDX70695	Canola	plasma membrane	76.54	76.54
CDX78692	Canola	cytosol, endoplasmic reticulum, plasma membrane	75.98	76.4
AT5G16460.1	Thale cress	plasma membrane	71.79	69.84
VIT_04s0023g00480.t01	Wine grape	plasma membrane, plastid, vacuole	26.82	37.8
KRH40303	Soybean	endoplasmic reticulum	40.78	35.87
KRH00920	Soybean	endoplasmic reticulum	41.34	33.26
Solyc04g056380.2.1	Tomato	golgi, nucleus, plasma membrane	37.99	33.01
GSMUA_Achr3P02430_001	Banana	cytosol, peroxisome, vacuole	37.15	31.74
PGSC0003DMT400018729	Potato	golgi, peroxisome, plasma membrane	36.59	31.19
CDY43679	Canola	plasma membrane	27.09	27.87
Os12t0148700-01	Rice	peroxisome, plasma membrane, plastid	31.56	27.63
HORVU4Hr1G025360.2	Barley	peroxisome, plasma membrane, plastid	31.56	27.29
OQU82879	Sorghum	plasma membrane	31.28	27.18
CDY66765	Canola	cytosol, peroxisome, plasma membrane	27.37	26.78
TraesCS4B01G134700.1	Wheat	plasma membrane	30.45	26.72
TraesCS4D01G129400.1	Wheat	plasma membrane	30.73	26.57
TraesCS4A01G184000.1	Wheat	plasma membrane	30.17	26.09
CDX99851	Canola	mitochondrion	26.54	22.95
CDX90209	Canola	cytosol, nucleus, plasma membrane	26.26	18.47
CDY35278	Canola	cytosol, nucleus, plasma membrane	25.42	18.31

Protein Annotations

EnsemblPlants:CDX85507	EnsemblPlantsGene:GSBRNA2T00143214001	GO:A0A078D8V0	GO:GO:0008150	GO:GO:0019915	InterPro:Seipin
PANTHER:PTHR21212	PFAM:PF06775	ProteinID:CDX85507	ProteinID:CDX85507.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI0004EE7AEA	MapMan:5.9.1	:	:	:	:

Description

BnaA02g03060D

Coordinates

chrLK031842:+:425945..428576

Molecular Weight (calculated)

41170.2 Da

IEP (calculated)

10.799

GRAVY (calculated)

0.137

Length

358 amino acids

Sequence
(BLAST)

001: MEEVDIELKI PDPLRADWFM ILVDIQADLI YNALVVLTSP LFLIYRSYRR AAAAISVAEN TVKRAPSRIK GGAARVVRRT WFGVMGACHV SAIMVAAMIL
101: AVVLGVGIVS LYVEKPVVVR ERLFFDYTED NPSAVFSLGK KKRPFGVPLG HKVHVSLVLW MPESDLNRRI GLFQLKVELL SLKGEIIARS SQPCMLRFRS
201: QPIRLARTFV MSVPLVAGIA NEAQTMRIDA LMHQEKGTRT KTVRVTLIPR AQTRLLPQLY EAEIVINSKP PWTKRMAYNW KWTLCVWTSM YLFVPILIAL
301: LWCFRPFLFP YVISRTVVED QNTEIRVVQE EVAGRRLRER RNKPRRRNFT TTQEIYIL

Best Arabidopsis Sequence Match ( AT5G16460.1 )
(BLAST)

001: MRILQNKTMK EQDNQLKIPE PLRADWFMVL VTIQADLIYN ALVVLSSPFF LLYRSYRRAV VTVSAAEKAV KRAPAQIAGG AGRVVRRTWF GILGACHVSM
101: VMVLALILAV VIGVGIVSLY VEKPVVVRDR LFFDYTEENP SAVFSFDKKK RSFSVPVGHS VHVSLVLWMP ESEINRRIGV FQLKVELLSL KGETIARSSQ
201: PCMLRFRSKP IRLARTFVMS VPLIAGIANE AQTMRIDALK HQEKMPRTKA VRATLIPRAQ TRTLPQLYEA EIVINSKPPW IKRMAYNWKW TLCVWTSMYL
301: YVAILTALLW CFRPVLFPYT SSRTISESEN LEIEVVEEEQ EQVMERRRRE RRNQPRRRNF ATTQKSYT

Arabidopsis Description

SEI1Seipin-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFD9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.