CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032334.1-P	Field mustard	mitochondrion	41.06	88.54
CDY43679	Canola	plasma membrane	42.27	50.29
VIT_10s0003g01840.t01	Wine grape	plasma membrane	35.51	49.66
CDY35278	Canola	cytosol, nucleus, plasma membrane	58.94	49.09
CDX90209	Canola	cytosol, nucleus, plasma membrane	57.49	46.76
CDY66765	Canola	cytosol, peroxisome, plasma membrane	41.3	46.72
AT1G29760.1	Thale cress	cytosol, nucleus, plasma membrane	53.62	42.21
KRH11077	Soybean	cytosol, nucleus, peroxisome	39.61	32.41
Os09t0534000-01	Rice	cytosol, nucleus, plasma membrane, plastid	34.54	31.29
EER99253	Sorghum	plastid	35.27	31.2
KRH59037	Soybean	cytosol, nucleus, plasma membrane, plastid	38.89	30.9
Zm00001d021305_P001	Maize	plastid	34.3	30.74
PGSC0003DMT400073048	Potato	nucleus	40.82	30.12
Solyc02g071900.2.1	Tomato	cytosol	40.1	29.59
HORVU5Hr1G082480.1	Barley	mitochondrion	31.64	28.36
TraesCS5A01G322900.1	Wheat	cytosol, nucleus, vacuole	31.4	28.02
GSMUA_Achr9P24190_001	Banana	cytosol, peroxisome, plasma membrane	33.57	27.31
CDX70695	Canola	plasma membrane	23.43	27.09
CDX78692	Canola	cytosol, endoplasmic reticulum, plasma membrane	23.19	26.97
CDX85507	Canola	plasma membrane	22.95	26.54
CDY38111	Canola	plasma membrane	22.71	26.26
TraesCS5B01G323400.1	Wheat	cytosol, nucleus, plasma membrane, plastid	32.13	25.38

Protein Annotations

EnsemblPlants:CDX99851	EnsemblPlantsGene:GSBRNA2T00108570001	GO:A0A078EFE4	GO:GO:0008150	GO:GO:0019915	InterPro:Seipin
PANTHER:PTHR21212	PANTHER:PTHR21212:SF1	PFAM:PF06775	ProteinID:CDX99851	ProteinID:CDX99851.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI0004EF18BD	MapMan:5.9.1	:	:	:

Description

BnaC05g22730D

Coordinates

chrLK031914:+:596194..597574

Molecular Weight (calculated)

46909.4 Da

IEP (calculated)

10.421

GRAVY (calculated)

-0.020

Length

414 amino acids

Sequence
(BLAST)

001: MTRRYPLRKH SALGLRRRRS APRREFICSD AETDSSSSSS SSSSKPSYEE KETDLAPVIM DNMNGVLTDS GRVRVDPVQE TEESTVSDAV SNSPPPPKLQ
101: ERNSTHGSLL GLVFKAIGFQ FKLMSSLVKS SPFLLKLGRR FLLTQVSVFS DILFRALKLT GFKDTKRAVN VACKFGWGLF RAAYVGVLLF GLLVLAFVLG
201: GLAITRVLDK PFVIKEVLNF DYTKNSPEAF VPITSSIPRD HKLEITLSLT LPESYYNKNL GMFQVRVDFL SADGQTLDTI RRPCMLRFRS EPIRLVQSFF
301: KVVPLVTGYV SEIQTLTLKL KGFAEKDTPT ACLKVMIEQR AEFRPGAGIP ELYDASLSLE SDLPFFKRVV WKWRRTLFVW ISMTLFFTEL LFALVFCRSL
401: IIPRTRLRDI PDRK

Best Arabidopsis Sequence Match ( AT1G29760.1 )
(BLAST)

001: MDSESESESN PSTTDEFDRF LDAPDEFYYD CLPIRSNSHQ PSSLLRRRKS AHRRDLISSD IETEPSSSSD GFDVGEKSSY VEKNAELRGD IDTSDVIEST
101: KDSIDLSSEK ENDLDVISSS GNDMDVIDSG RNRVDPFQEE STVTTVSSDD QGDDDYAGSV PQFREPPNST EWSLLGFLVG LVIKAIEFQV SFMTSLLTFP
201: PWLLRNCFLF FFDPFSTIRF GRRFLMARVA GISDMIFGYM NPFRLKDTKQ MLSIVCKFGW GMFWAVYVGI VLFGLLVSSL MIGGYVINRI ADKPFEVKET
301: LNFDYTKNSP EAYVPISSCA GVECEGSCKE SNEMSKIRGL RVIPRDQKLD IILSMTLPES AYNKNLGMFQ VRVDFLSVDG QTIASIRRPC MLRFRSEPIR
401: LVQTFFKVVP LVTGYVSEIQ TLSLKLKGFV EKDIPTACLK IIIEQRAEFR PGAGIPELYD ASLSVESGLP FFRKIIWKWR KTLFVWISMS LFITELLFTL
501: VCCRPLIIPR TQPRDRSPSN PTGVWR

Arabidopsis Description

SEI2Seipin-2 [Source:UniProtKB/Swiss-Prot;Acc:F4I340]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.