Factsheet for PGSC0003DMT400073048

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g071900.2.1	Tomato	cytosol	92.51	92.51
Bra032334.1-P	Field mustard	mitochondrion	20.5	59.9
VIT_10s0003g01840.t01	Wine grape	plasma membrane	30.84	58.45
Bra010814.1-P	Field mustard	plasma membrane	25.67	53.33
CDY43679	Canola	plasma membrane	29.95	48.28
CDY66765	Canola	cytosol, peroxisome, plasma membrane	29.41	45.08
Bra021906.1-P	Field mustard	cytosol, peroxisome, plasma membrane	31.19	41.97
CDX99851	Canola	mitochondrion	30.12	40.82
KRH11077	Soybean	cytosol, nucleus, peroxisome	35.29	39.13
KRH59037	Soybean	cytosol, nucleus, plasma membrane, plastid	35.83	38.58
CDY35278	Canola	cytosol, nucleus, plasma membrane	33.69	38.03
AT2G34380.1	Thale cress	cytosol, nucleus, plasma membrane	33.69	37.13
AT1G29760.1	Thale cress	cytosol, nucleus, plasma membrane	34.58	36.88
PGSC0003DMT400018200	Potato	cytosol, nucleus, peroxisome	29.59	35.85
EER99253	Sorghum	plastid	29.77	35.68
Os09t0534000-01	Rice	cytosol, nucleus, plasma membrane, plastid	29.06	35.67
CDX90209	Canola	cytosol, nucleus, plasma membrane	31.91	35.17
TraesCS5A01G322900.1	Wheat	cytosol, nucleus, vacuole	27.99	33.84
Zm00001d021305_P001	Maize	plastid	27.45	33.33
GSMUA_Achr9P24190_001	Banana	cytosol, peroxisome, plasma membrane	30.12	33.2
HORVU5Hr1G082480.1	Barley	mitochondrion	27.27	33.12
TraesCS5B01G323400.1	Wheat	cytosol, nucleus, plasma membrane, plastid	29.06	31.11
PGSC0003DMT400018729	Potato	golgi, peroxisome, plasma membrane	16.76	22.38

Protein Annotations

EnsemblPlants:PGSC0003DMT400073048	EnsemblPlantsGene:PGSC0003DMG400028410	EntrezGene:102591271	GO:GO:0005575	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0019915	InterPro:Seipin	PANTHER:PTHR21212	PANTHER:PTHR21212:SF1	PFAM:PF06775
PGSC:PGSC0003DMG400028410	RefSeq:XP_006358083.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI000295CAB5	UniProt:M1CRF2
MapMan:5.9.1	:	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400028410]

Coordinates

chr2:+:31361431..31364296

Molecular Weight (calculated)

63575.2 Da

IEP (calculated)

5.768

GRAVY (calculated)

-0.169

Length

561 amino acids

Sequence
(BLAST)

001: MEYTQPNKQD NNGDLFDDAA DEFPFDDCSD IFSDAETGGS EDDVNHNQSA ENFNFPSSSL RHRRPFSFND SGNESTKFQP SISSESYSNS RERKIRFSRK
101: LMAEDKDKNG SLDNIESSNS MQLDLSTKSQ KGIGDEQNKE IPTGMNANSV IIDNSNEDSS LVKEDSVITD VNNDRVNNSE EVNSHLREID DSSSNILFDL
201: ANVVIKSVGF QVNMLITIVS LMIKLFTFPV WIIYSSYMFV MDPFQIMRRV KRYVIHRFMR SFGFVFESML KFVSGWLKEQ SSVWRLGLQF GWGCLWSVYV
301: CFVLVGLLVS AFIMGGILIR IMVEEPIRMN EPLNFDYTAK SPVAYVPIIR SPGVTCGVDS QVDVGMVDGV RVIPPNHKLQ VTVSLMLPES DYNRNLGIFQ
401: VRVDFLNSNG KVLSSARRPC MLQFKSNPIR LFSTFLKAAP LVTGYTSESQ KLKVDLKGFS EGFIPTACLR VIIEQRAEFH PGGGVPEIYA ASLTLESELP
501: FMKRMLWYWK TTLFVWVSMT LFTMEFLFAL LCCKPLIIPR LRLRHDPNSR TGSPNNAPIG R

Best Arabidopsis Sequence Match ( AT1G29760.1 )
(BLAST)

001: MDSESESESN PSTTDEFDRF LDAPDEFYYD CLPIRSNSHQ PSSLLRRRKS AHRRDLISSD IETEPSSSSD GFDVGEKSSY VEKNAELRGD IDTSDVIEST
101: KDSIDLSSEK ENDLDVISSS GNDMDVIDSG RNRVDPFQEE STVTTVSSDD QGDDDYAGSV PQFREPPNST EWSLLGFLVG LVIKAIEFQV SFMTSLLTFP
201: PWLLRNCFLF FFDPFSTIRF GRRFLMARVA GISDMIFGYM NPFRLKDTKQ MLSIVCKFGW GMFWAVYVGI VLFGLLVSSL MIGGYVINRI ADKPFEVKET
301: LNFDYTKNSP EAYVPISSCA GVECEGSCKE SNEMSKIRGL RVIPRDQKLD IILSMTLPES AYNKNLGMFQ VRVDFLSVDG QTIASIRRPC MLRFRSEPIR
401: LVQTFFKVVP LVTGYVSEIQ TLSLKLKGFV EKDIPTACLK IIIEQRAEFR PGAGIPELYD ASLSVESGLP FFRKIIWKWR KTLFVWISMS LFITELLFTL
501: VCCRPLIIPR TQPRDRSPSN PTGVWR

Arabidopsis Description

SEI2Seipin-2 [Source:UniProtKB/Swiss-Prot;Acc:F4I340]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.