Factsheet for PGSC0003DMT400018729

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, golgi, plasma membrane

Predictor Summary:

nucleus 1
golgi 2
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, peroxisome, plasma membrane
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g056380.2.1	Tomato	golgi, nucleus, plasma membrane	74.05	75.49
VIT_04s0023g00480.t01	Wine grape	plasma membrane, plastid, vacuole	30.95	51.18
Bra006356.1-P	Field mustard	extracellular	29.29	45.22
KRH40303	Soybean	endoplasmic reticulum	40.71	42.01
CDX70695	Canola	plasma membrane	33.33	39.11
CDX78692	Canola	cytosol, endoplasmic reticulum, plasma membrane	32.86	38.76
KRH00920	Soybean	endoplasmic reticulum	40.48	38.2
CDY38111	Canola	plasma membrane	32.14	37.71
Bra023566.1-P	Field mustard	plasma membrane	31.43	37.08
CDX85507	Canola	plasma membrane	31.19	36.59
AT5G16460.1	Thale cress	plasma membrane	31.67	36.14
GSMUA_Achr3P02430_001	Banana	cytosol, peroxisome, vacuole	34.76	34.84
OQU82879	Sorghum	plasma membrane	27.14	27.67
Os12t0148700-01	Rice	peroxisome, plasma membrane, plastid	26.9	27.63
HORVU4Hr1G025360.2	Barley	peroxisome, plasma membrane, plastid	26.43	26.81
TraesCS4B01G134700.1	Wheat	plasma membrane	25.71	26.47
TraesCS4A01G184000.1	Wheat	plasma membrane	25.95	26.33
TraesCS4D01G129400.1	Wheat	plasma membrane	25.95	26.33
PGSC0003DMT400018200	Potato	cytosol, nucleus, peroxisome	20.71	18.79
PGSC0003DMT400073048	Potato	nucleus	22.38	16.76

Protein Annotations

EntrezGene:102581316	MapMan:5.9.1	GO:GO:0000003	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0007275	GO:GO:0008150	GO:GO:0009791	GO:GO:0009846
GO:GO:0009856	GO:GO:0009987	GO:GO:0010162	GO:GO:0010344	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0019915	GO:GO:0034389	GO:GO:0048316	GO:GO:0080155	GO:GO:0140042
UniProt:M1AB27	PFAM:PF06775	EnsemblPlantsGene:PGSC0003DMG400007260	PGSC:PGSC0003DMG400007260	EnsemblPlants:PGSC0003DMT400018729	PANTHER:PTHR21212
InterPro:Seipin	TMHMM:TMhelix	UniParc:UPI000294FE81	RefSeq:XP_006350411.1	SEG:seg	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400007260]

Coordinates

chr4:-:50246652..50248787

Molecular Weight (calculated)

47729.0 Da

IEP (calculated)

4.780

GRAVY (calculated)

0.072

Length

420 amino acids

Sequence
(BLAST)

001: MISMEENDEF DEQQEKEEYV DDNEDELLKN NNLSVQNSSS NWFIKMLSLQ VEIITTILIS LVSPIFYILS FANIFEEEET EKKVSVAVHV VATVPSKLLN
101: GVTLLLKKFG VGILGAAYVA IVLITLLFVS GILGFGLVRM WMEEPVVLRE QMYFDYADVN PKAVFSFGGD YSHKNDIGVP VGHTMYVSLF LLMPESDFNR
201: DIGVFQLVAE ALSKEGLVMA TSSHPCMLRF RSLPIRLMRE FIMSVPLVLG LTAETQTIVV PMLKHKEGLP RTEAIRITMI PRAGTFGLPQ LYQSQIILKS
301: QPPWYKNLVY KWKWTFFVWT SMYMYATLLV ILLNWCRPLV FPVIATSFMT SADVNLTVEA PEEPQEKGRE ESDVSESVRR WRQSRRKRKA MLQQSVSPEL
401: ADDAASSISI TREDTADSSE

Best Arabidopsis Sequence Match ( AT5G16460.1 )
(BLAST)

001: MRILQNKTMK EQDNQLKIPE PLRADWFMVL VTIQADLIYN ALVVLSSPFF LLYRSYRRAV VTVSAAEKAV KRAPAQIAGG AGRVVRRTWF GILGACHVSM
101: VMVLALILAV VIGVGIVSLY VEKPVVVRDR LFFDYTEENP SAVFSFDKKK RSFSVPVGHS VHVSLVLWMP ESEINRRIGV FQLKVELLSL KGETIARSSQ
201: PCMLRFRSKP IRLARTFVMS VPLIAGIANE AQTMRIDALK HQEKMPRTKA VRATLIPRAQ TRTLPQLYEA EIVINSKPPW IKRMAYNWKW TLCVWTSMYL
301: YVAILTALLW CFRPVLFPYT SSRTISESEN LEIEVVEEEQ EQVMERRRRE RRNQPRRRNF ATTQKSYT

Arabidopsis Description

SEI1Seipin-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFD9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.