Factsheet for Bra023566.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 5
mitochondrion 1
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	mitochondrion, plasma membrane, plastid
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85507	Canola	plasma membrane	93.82	93.3
Bra006356.1-P	Field mustard	extracellular	57.58	75.37
AT5G16460.1	Thale cress	plasma membrane	72.47	70.11
Bra032334.1-P	Field mustard	mitochondrion	20.79	38.54
VIT_04s0023g00480.t01	Wine grape	plasma membrane, plastid, vacuole	27.25	38.19
KRH40303	Soybean	endoplasmic reticulum	41.01	35.87
KRH00920	Soybean	endoplasmic reticulum	41.57	33.26
Solyc04g056380.2.1	Tomato	golgi, nucleus, plasma membrane	38.2	33.01
Bra010814.1-P	Field mustard	plasma membrane	24.72	32.59
GSMUA_Achr3P02430_001	Banana	cytosol, peroxisome, vacuole	37.92	32.22
PGSC0003DMT400018729	Potato	golgi, peroxisome, plasma membrane	37.08	31.43
Os12t0148700-01	Rice	peroxisome, plasma membrane, plastid	32.02	27.87
HORVU4Hr1G025360.2	Barley	peroxisome, plasma membrane, plastid	32.3	27.78
OQU82879	Sorghum	plasma membrane	31.46	27.18
TraesCS4B01G134700.1	Wheat	plasma membrane	30.9	26.96
TraesCS4D01G129400.1	Wheat	plasma membrane	31.18	26.81
TraesCS4A01G184000.1	Wheat	plasma membrane	30.9	26.57
Bra021906.1-P	Field mustard	cytosol, peroxisome, plasma membrane	28.09	23.98

Protein Annotations

EnsemblPlants:Bra023566.1	EnsemblPlants:Bra023566.1-P	EnsemblPlantsGene:Bra023566	GO:GO:0005575	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0019915	InterPro:Seipin	PANTHER:PTHR21212	PFAM:PF06775	SEG:seg
TMHMM:TMhelix	UniParc:UPI0002543045	UniProt:M4E463	MapMan:5.9.1	:	:

Description

AT5G16460 (E=2e-143) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Adipose-regulatory protein, Seipin (InterPro:IPR009617); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29760.1); Has 150 Blast hits to 150 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 103; Fungi - 16; Plants - 29; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

Coordinates

chrA02:-:3956677..3958219

Molecular Weight (calculated)

40868.8 Da

IEP (calculated)

10.799

GRAVY (calculated)

0.119

Length

356 amino acids

Sequence
(BLAST)

001: MEEADIELKI PDPLRADWFM ILVDIQADLI YNALVVLTSP LFLIYRSYRR AAAAISVAEN TVKRAPSRIK GGAARVVRRT WFGVMGACHV SAIMVAAMIL
101: AVVLGVGIVS LYVEKPVVVR ERLFFDYTED NPSAVFSLGK KKRPFGVPLG HKVHVSLVLW MPESDLNRRI GLFQLKVELL SLKGEIIARS SQPCMLRFRS
201: QPIRLARTFV MSVPLVAGIA NEAQTMRIDA LMHQEKGTRT KTVRVTLIPR AQTRLLPQLY EAEIVINSKP PWTKRMAYNW KWTLCVWTSM YLFVPILIAL
301: LWCFRPFLFP YVTSRTVVED QNTEIRVVQE EVAGRRLRER RNKPRRRTTT QEIYIL

Best Arabidopsis Sequence Match ( AT5G16460.1 )
(BLAST)

001: MRILQNKTMK EQDNQLKIPE PLRADWFMVL VTIQADLIYN ALVVLSSPFF LLYRSYRRAV VTVSAAEKAV KRAPAQIAGG AGRVVRRTWF GILGACHVSM
101: VMVLALILAV VIGVGIVSLY VEKPVVVRDR LFFDYTEENP SAVFSFDKKK RSFSVPVGHS VHVSLVLWMP ESEINRRIGV FQLKVELLSL KGETIARSSQ
201: PCMLRFRSKP IRLARTFVMS VPLIAGIANE AQTMRIDALK HQEKMPRTKA VRATLIPRAQ TRTLPQLYEA EIVINSKPPW IKRMAYNWKW TLCVWTSMYL
301: YVAILTALLW CFRPVLFPYT SSRTISESEN LEIEVVEEEQ EQVMERRRRE RRNQPRRRNF ATTQKSYT

Arabidopsis Description

SEI1Seipin-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFD9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.