CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
plastid 1
cytosol 1
plasma membrane 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40303	Soybean	endoplasmic reticulum	75.73	82.8
VIT_04s0023g00480.t01	Wine grape	plasma membrane, plastid, vacuole	31.24	54.72
Bra006356.1-P	Field mustard	extracellular	29.66	48.53
AT5G16460.1	Thale cress	plasma membrane	36.63	44.29
CDX78692	Canola	cytosol, endoplasmic reticulum, plasma membrane	34.83	43.54
CDX70695	Canola	plasma membrane	34.83	43.3
Solyc04g056380.2.1	Tomato	golgi, nucleus, plasma membrane	38.65	41.75
CDY38111	Canola	plasma membrane	33.48	41.62
Bra023566.1-P	Field mustard	plasma membrane	33.26	41.57
CDX85507	Canola	plasma membrane	33.26	41.34
PGSC0003DMT400018729	Potato	golgi, peroxisome, plasma membrane	38.2	40.48
GSMUA_Achr3P02430_001	Banana	cytosol, peroxisome, vacuole	31.24	33.17
Os12t0148700-01	Rice	peroxisome, plasma membrane, plastid	28.09	30.56
OQU82879	Sorghum	plasma membrane	26.74	28.88
TraesCS4A01G184000.1	Wheat	plasma membrane	26.52	28.5
HORVU4Hr1G025360.2	Barley	peroxisome, plasma membrane, plastid	26.29	28.26
TraesCS4D01G129400.1	Wheat	plasma membrane	26.07	28.02
TraesCS4B01G134700.1	Wheat	plasma membrane	25.62	27.94
KRH11077	Soybean	cytosol, nucleus, peroxisome	23.15	20.36
KRH59037	Soybean	cytosol, nucleus, plasma membrane, plastid	22.02	18.81

Protein Annotations

EMBL:ACUP02011482	EnsemblPlants:KRH00920	EnsemblPlantsGene:GLYMA_18G242100	EntrezGene:100788783	GO:GO:0005575	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0019915	InterPro:Seipin	PANTHER:PTHR21212	PFAM:PF06775
ProteinID:KRH00920	ProteinID:KRH00920.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI000233E58F	UniProt:I1N3Z2
MapMan:5.9.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:53053645..53055889

Molecular Weight (calculated)

50037.6 Da

IEP (calculated)

7.276

GRAVY (calculated)

0.061

Length

445 amino acids

Sequence
(BLAST)

001: MQQYSTFLCL SFPSKFPTSP HLSETTLHSI SMEEHKKEGF FLPTPVAKLI SFQTDLIYNG LVSLFSPIHS LFSVASESYH RAEETKDSVE SAVQRALSHQ
101: ITHGSALLLK KLGLCFLSVA YVCMVMILAL ILAAVVGVAL VRLWVEEPVS VKDNLHFDYT EAHPTAVFSF NGVRSLKGHL KKKHISVPVG HSFFASLVLV
201: MPESDFNREL GVFQLTAELL SVNGNVIEKS SQPCMLRFRS SPIRLVRTFM MGVPLVLGIS GETQNINVDI LKHKEDYRRS NSIRVTLHPR AGTSSLPQLY
301: EAKIAINSHL PWTKELVRNW KWTFYVWVSL YVYIVLLVSL LCCYRPLIFL VTPEYFSDHR VSELTREEPG QLQVEELGDE SEVSELLRKW RRSRSKRKTV
401: LAHGGVPETI VGSSTSSISM MTTREDVTSV AVEDEVEDSE SACIG

Best Arabidopsis Sequence Match ( AT5G16460.1 )
(BLAST)

001: MRILQNKTMK EQDNQLKIPE PLRADWFMVL VTIQADLIYN ALVVLSSPFF LLYRSYRRAV VTVSAAEKAV KRAPAQIAGG AGRVVRRTWF GILGACHVSM
101: VMVLALILAV VIGVGIVSLY VEKPVVVRDR LFFDYTEENP SAVFSFDKKK RSFSVPVGHS VHVSLVLWMP ESEINRRIGV FQLKVELLSL KGETIARSSQ
201: PCMLRFRSKP IRLARTFVMS VPLIAGIANE AQTMRIDALK HQEKMPRTKA VRATLIPRAQ TRTLPQLYEA EIVINSKPPW IKRMAYNWKW TLCVWTSMYL
301: YVAILTALLW CFRPVLFPYT SSRTISESEN LEIEVVEEEQ EQVMERRRRE RRNQPRRRNF ATTQKSYT

Arabidopsis Description

SEI1Seipin-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFD9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.