Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 7
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78692 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 87.13 | 66.57 |
| CDX70695 | Canola | plasma membrane | 85.29 | 64.8 |
| AT5G16460.1 | Thale cress | plasma membrane | 80.15 | 59.24 |
| Bra023566.1-P | Field mustard | plasma membrane | 75.37 | 57.58 |
| VIT_04s0023g00480.t01 | Wine grape | plasma membrane, plastid, vacuole | 35.66 | 38.19 |
| Bra032334.1-P | Field mustard | mitochondrion | 25.37 | 35.94 |
| Bra010814.1-P | Field mustard | plasma membrane | 32.72 | 32.96 |
| KRH40303 | Soybean | endoplasmic reticulum | 48.9 | 32.68 |
| KRH00920 | Soybean | endoplasmic reticulum | 48.53 | 29.66 |
| Solyc04g056380.2.1 | Tomato | golgi, nucleus, plasma membrane | 44.85 | 29.61 |
| PGSC0003DMT400018729 | Potato | golgi, peroxisome, plasma membrane | 45.22 | 29.29 |
| GSMUA_Achr3P02430_001 | Banana | cytosol, peroxisome, vacuole | 40.44 | 26.25 |
| OQU82879 | Sorghum | plasma membrane | 35.66 | 23.54 |
| Os12t0148700-01 | Rice | peroxisome, plasma membrane, plastid | 34.56 | 22.98 |
| HORVU4Hr1G025360.2 | Barley | peroxisome, plasma membrane, plastid | 33.82 | 22.22 |
| Bra021906.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 33.46 | 21.82 |
| TraesCS4B01G134700.1 | Wheat | plasma membrane | 32.72 | 21.81 |
| TraesCS4D01G129400.1 | Wheat | plasma membrane | 32.72 | 21.5 |
| TraesCS4A01G184000.1 | Wheat | plasma membrane | 31.99 | 21.01 |
Protein Annotations
| EnsemblPlants:Bra006356.1 | EnsemblPlants:Bra006356.1-P | EnsemblPlantsGene:Bra006356 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0019915 | InterPro:Seipin | PANTHER:PTHR21212 | PFAM:PF06775 | SEG:seg |
| SignalP:SignalP-TM | TMHMM:TMhelix | UniParc:UPI000253F5FF | UniProt:M4CQ67 | MapMan:5.9.1 | : |
Description
AT5G16460 (E=7e-118) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Adipose-regulatory protein, Seipin (InterPro:IPR009617); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29760.1); Has 150 Blast hits to 150 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 103; Fungi - 16; Plants - 29; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Coordinates
chrA03:-:3151964..3152940
Molecular Weight (calculated)
31774.5 Da
IEP (calculated)
10.716
GRAVY (calculated)
0.008
Length
272 amino acids
Sequence
(BLAST)
(BLAST)
001: MGACQVSMVM VLALIIAAVL GIGVVSLYVE KPVVVRERLF FDYTEENPSA VFSFEKKKRP FGVPVGHKVH VSLVMWMPES DLNRRLGLFQ LKVELLSLKG
101: ETIARSSQPC MLRFRSKPIR LARTFVMSVP LVAGFANEAQ TMRIDALVHQ EKWPRTKAVR ATLIPRAQTR LLPQLYEAEV VINSKPPWTK RMAYNWKWTL
201: YVWTSMYLYV PILVALLWCF RPFLFPYVAS RTVAETERLE MEVVEEVMER RLRERRKTPR RRTFITTRET YT
101: ETIARSSQPC MLRFRSKPIR LARTFVMSVP LVAGFANEAQ TMRIDALVHQ EKWPRTKAVR ATLIPRAQTR LLPQLYEAEV VINSKPPWTK RMAYNWKWTL
201: YVWTSMYLYV PILVALLWCF RPFLFPYVAS RTVAETERLE MEVVEEVMER RLRERRKTPR RRTFITTRET YT
001: MRILQNKTMK EQDNQLKIPE PLRADWFMVL VTIQADLIYN ALVVLSSPFF LLYRSYRRAV VTVSAAEKAV KRAPAQIAGG AGRVVRRTWF GILGACHVSM
101: VMVLALILAV VIGVGIVSLY VEKPVVVRDR LFFDYTEENP SAVFSFDKKK RSFSVPVGHS VHVSLVLWMP ESEINRRIGV FQLKVELLSL KGETIARSSQ
201: PCMLRFRSKP IRLARTFVMS VPLIAGIANE AQTMRIDALK HQEKMPRTKA VRATLIPRAQ TRTLPQLYEA EIVINSKPPW IKRMAYNWKW TLCVWTSMYL
301: YVAILTALLW CFRPVLFPYT SSRTISESEN LEIEVVEEEQ EQVMERRRRE RRNQPRRRNF ATTQKSYT
101: VMVLALILAV VIGVGIVSLY VEKPVVVRDR LFFDYTEENP SAVFSFDKKK RSFSVPVGHS VHVSLVLWMP ESEINRRIGV FQLKVELLSL KGETIARSSQ
201: PCMLRFRSKP IRLARTFVMS VPLIAGIANE AQTMRIDALK HQEKMPRTKA VRATLIPRAQ TRTLPQLYEA EIVINSKPPW IKRMAYNWKW TLCVWTSMYL
301: YVAILTALLW CFRPVLFPYT SSRTISESEN LEIEVVEEEQ EQVMERRRRE RRNQPRRRNF ATTQKSYT
Arabidopsis Description
SEI1Seipin-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFD9]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.