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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • nucleus 1
  • vacuole 2
  • plasma membrane 3
  • extracellular 1
  • endoplasmic reticulum 2
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:nucleus, secretory
BaCelLo:nucleus
MultiLoc:vacuole
Plant-mPloc:plasma membrane
PProwler:secretory
WoLF PSORT:endoplasmic reticulum
YLoc:plasma membrane
 endoplasmic reticulum: 27224218
nucleus: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH00920 Soybean endoplasmic reticulum 82.8 75.73
VIT_04s0023g00480.t01 Wine grape plasma membrane, plastid, vacuole 34.64 55.51
Bra006356.1-P Field mustard extracellular 32.68 48.9
CDX78692 Canola cytosol, endoplasmic reticulum, plasma membrane 38.33 43.82
CDX70695 Canola plasma membrane 38.08 43.3
AT5G16460.1 Thale cress plasma membrane 38.57 42.66
CDY38111 Canola plasma membrane 36.36 41.34
Solyc04g056380.2.1 Tomato golgi, nucleus, plasma membrane 41.77 41.26
Bra023566.1-P Field mustard plasma membrane 35.87 41.01
CDX85507 Canola plasma membrane 35.87 40.78
PGSC0003DMT400018729 Potato golgi, peroxisome, plasma membrane 42.01 40.71
GSMUA_Achr3P02430_001 Banana cytosol, peroxisome, vacuole 36.85 35.8
Os12t0148700-01 Rice peroxisome, plasma membrane, plastid 30.71 30.56
OQU82879 Sorghum plasma membrane 29.73 29.37
HORVU4Hr1G025360.2 Barley peroxisome, plasma membrane, plastid 29.24 28.74
TraesCS4A01G184000.1 Wheat plasma membrane 28.75 28.26
TraesCS4D01G129400.1 Wheat plasma membrane 28.5 28.02
TraesCS4B01G134700.1 Wheat plasma membrane 27.52 27.45
KRH11077 Soybean cytosol, nucleus, peroxisome 24.08 19.37
KRH59037 Soybean cytosol, nucleus, plasma membrane, plastid 23.34 18.23
Protein Annotations
EMBL:ACUP02006035EnsemblPlants:KRH40303EnsemblPlantsGene:GLYMA_09G250400EntrezGene:100813191GO:GO:0005575GO:GO:0008150
GO:GO:0016020GO:GO:0016021GO:GO:0019915InterPro:SeipinPANTHER:PTHR21212PANTHER:PTHR21212:SF0
PFAM:PF06775ProteinID:KRH40303ProteinID:KRH40303.1SEG:segTMHMM:TMhelixUniParc:UPI00023C8A2B
UniProt:I1L6A3MapMan:5.9.1::::
Description
hypothetical protein
Coordinates
chr9:+:47114135..47117088
Molecular Weight (calculated)
45737.5 Da
IEP (calculated)
7.643
GRAVY (calculated)
0.097
Length
407 amino acids
Sequence
(BLAST)
001: MEEHRKEGFF LPTPVAKLIS FQTDLIYNGL VSLFSSIHSL FSVATESYHR AEETKDSVES AVQRAPSQST HGSALLLKKL GLCFLSVAYV CMVMILALIL
101: AAVVGVALVR LWVEEPVSVK ENLHFDYTEA HPTAVFLFNG VRSFKGHLKK KQISVPVGHS FFASLVLVMP ESDFNRELGV FQLTAELISV NGNVIAKSSQ
201: PCMLRFRSSP IRLARTFMMG VPLVLGISGE TQNINVEILR HKEDYRRSNA IRVTLHPRAG TSSLPQLYEA DIVIKSHLPW TKELVRNWKW TFYVWVSLYV
301: YIVLLVSLLC CYRPLVFLVT PEYFNDHRVS ELTREEPGQL GDESEVSELL RKWRRSRSKR KTVLAHGGVP ETIVGSSASS ISMTAREDVT SVVMEDEVED
401: SESVCIG
Best Arabidopsis Sequence Match ( AT5G16460.1 )
(BLAST)
001: MRILQNKTMK EQDNQLKIPE PLRADWFMVL VTIQADLIYN ALVVLSSPFF LLYRSYRRAV VTVSAAEKAV KRAPAQIAGG AGRVVRRTWF GILGACHVSM
101: VMVLALILAV VIGVGIVSLY VEKPVVVRDR LFFDYTEENP SAVFSFDKKK RSFSVPVGHS VHVSLVLWMP ESEINRRIGV FQLKVELLSL KGETIARSSQ
201: PCMLRFRSKP IRLARTFVMS VPLIAGIANE AQTMRIDALK HQEKMPRTKA VRATLIPRAQ TRTLPQLYEA EIVINSKPPW IKRMAYNWKW TLCVWTSMYL
301: YVAILTALLW CFRPVLFPYT SSRTISESEN LEIEVVEEEQ EQVMERRRRE RRNQPRRRNF ATTQKSYT
Arabidopsis Description
SEI1Seipin-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFD9]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.