Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- peroxisome 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G184000.1 | Wheat | plasma membrane | 93.0 | 93.0 |
| TraesCS4B01G134700.1 | Wheat | plasma membrane | 87.68 | 88.97 |
| HORVU4Hr1G025360.2 | Barley | peroxisome, plasma membrane, plastid | 82.13 | 82.13 |
| Os12t0148700-01 | Rice | peroxisome, plasma membrane, plastid | 53.38 | 54.03 |
| OQU82879 | Sorghum | plasma membrane | 53.38 | 53.64 |
| Bra006356.1-P | Field mustard | extracellular | 21.5 | 32.72 |
| VIT_04s0023g00480.t01 | Wine grape | plasma membrane, plastid, vacuole | 20.05 | 32.68 |
| Bra023566.1-P | Field mustard | plasma membrane | 26.81 | 31.18 |
| CDX85507 | Canola | plasma membrane | 26.57 | 30.73 |
| GSMUA_Achr3P02430_001 | Banana | cytosol, peroxisome, vacuole | 30.68 | 30.31 |
| CDY38111 | Canola | plasma membrane | 25.85 | 29.89 |
| AT5G16460.1 | Thale cress | plasma membrane | 25.6 | 28.8 |
| CDX70695 | Canola | plasma membrane | 24.88 | 28.77 |
| KRH40303 | Soybean | endoplasmic reticulum | 28.02 | 28.5 |
| CDX78692 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 24.4 | 28.37 |
| Solyc04g056380.2.1 | Tomato | golgi, nucleus, plasma membrane | 26.57 | 26.7 |
| KRH00920 | Soybean | endoplasmic reticulum | 28.02 | 26.07 |
| PGSC0003DMT400018729 | Potato | golgi, peroxisome, plasma membrane | 26.33 | 25.95 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G129400.1 | EnsemblPlantsGene:TraesCS4D01G129400 | GO:GO:0008150 | GO:GO:0019915 | InterPro:Seipin | PANTHER:PTHR21212 |
| PANTHER:PTHR21212:SF0 | PFAM:PF06775 | SEG:seg | TMHMM:TMhelix | MapMan:5.9.1 | : |
Description
No Description!
Coordinates
chr4D:+:115055311..115056642
Molecular Weight (calculated)
44656.8 Da
IEP (calculated)
9.975
GRAVY (calculated)
0.074
Length
414 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPGPHHPST YNHHHHHYPF LPAAGPPTAG GDTLLFLLAI PAGWLVRLVA FLGERVISAV LALVVLPGAT LVGELRTVPA AAASLARRAA VGALAAAFTF
101: AALAVALVAS LLLGFVLIRH WVEDPVTVRQ PLYFDYTEPQ PSAAVALGPP AGHSVRVSMS LLLPDSDHNR QIGVFQIKTE AIAPSGSTIA SATQPYMLRY
201: KSAPVRLAQS TLTIVPLALG MRSESQSATL KLLQYWEGHD RHRRTRLIRV SLQPRAMTVH LPQVYRAEIT VQTALPWFKA VARSLKWTMC VWLSFWVYVI
301: LSLLAVRWVW PLALSASDSH RGLSDHQVNG KTIAANLGGG DTGQSSHEGS SRGGAVKWRD RRGRRKAQQT THGGMELKLA EGSSSSSAVA ETDEVVDDDH
401: GEPLAARLPV SDSC
101: AALAVALVAS LLLGFVLIRH WVEDPVTVRQ PLYFDYTEPQ PSAAVALGPP AGHSVRVSMS LLLPDSDHNR QIGVFQIKTE AIAPSGSTIA SATQPYMLRY
201: KSAPVRLAQS TLTIVPLALG MRSESQSATL KLLQYWEGHD RHRRTRLIRV SLQPRAMTVH LPQVYRAEIT VQTALPWFKA VARSLKWTMC VWLSFWVYVI
301: LSLLAVRWVW PLALSASDSH RGLSDHQVNG KTIAANLGGG DTGQSSHEGS SRGGAVKWRD RRGRRKAQQT THGGMELKLA EGSSSSSAVA ETDEVVDDDH
401: GEPLAARLPV SDSC
001: MRILQNKTMK EQDNQLKIPE PLRADWFMVL VTIQADLIYN ALVVLSSPFF LLYRSYRRAV VTVSAAEKAV KRAPAQIAGG AGRVVRRTWF GILGACHVSM
101: VMVLALILAV VIGVGIVSLY VEKPVVVRDR LFFDYTEENP SAVFSFDKKK RSFSVPVGHS VHVSLVLWMP ESEINRRIGV FQLKVELLSL KGETIARSSQ
201: PCMLRFRSKP IRLARTFVMS VPLIAGIANE AQTMRIDALK HQEKMPRTKA VRATLIPRAQ TRTLPQLYEA EIVINSKPPW IKRMAYNWKW TLCVWTSMYL
301: YVAILTALLW CFRPVLFPYT SSRTISESEN LEIEVVEEEQ EQVMERRRRE RRNQPRRRNF ATTQKSYT
101: VMVLALILAV VIGVGIVSLY VEKPVVVRDR LFFDYTEENP SAVFSFDKKK RSFSVPVGHS VHVSLVLWMP ESEINRRIGV FQLKVELLSL KGETIARSSQ
201: PCMLRFRSKP IRLARTFVMS VPLIAGIANE AQTMRIDALK HQEKMPRTKA VRATLIPRAQ TRTLPQLYEA EIVINSKPPW IKRMAYNWKW TLCVWTSMYL
301: YVAILTALLW CFRPVLFPYT SSRTISESEN LEIEVVEEEQ EQVMERRRRE RRNQPRRRNF ATTQKSYT
Arabidopsis Description
SEI1Seipin-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFD9]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.