Factsheet for GSMUA_Achr3P02430_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, vacuole, cytosol

Predictor Summary:

nucleus 1
vacuole 2
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
golgi 1
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, vacuole
Any Predictor:	cytosol, nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	vacuole
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0023g00480.t01	Wine grape	plasma membrane, plastid, vacuole	25.54	42.13
Bra006356.1-P	Field mustard	extracellular	26.25	40.44
Bra023566.1-P	Field mustard	plasma membrane	32.22	37.92
CDX85507	Canola	plasma membrane	31.74	37.15
CDY38111	Canola	plasma membrane	31.5	36.87
KRH40303	Soybean	endoplasmic reticulum	35.8	36.85
AT5G16460.1	Thale cress	plasma membrane	31.98	36.41
CDX78692	Canola	cytosol, endoplasmic reticulum, plasma membrane	30.07	35.39
PGSC0003DMT400018729	Potato	golgi, peroxisome, plasma membrane	34.84	34.76
CDX70695	Canola	plasma membrane	29.59	34.64
Solyc04g056380.2.1	Tomato	golgi, nucleus, plasma membrane	33.65	34.22
OQU82879	Sorghum	plasma membrane	32.7	33.25
Os12t0148700-01	Rice	peroxisome, plasma membrane, plastid	31.74	32.52
TraesCS4A01G184000.1	Wheat	plasma membrane	31.5	31.88
KRH00920	Soybean	endoplasmic reticulum	33.17	31.24
HORVU4Hr1G025360.2	Barley	peroxisome, plasma membrane, plastid	30.79	31.16
TraesCS4B01G134700.1	Wheat	plasma membrane	30.07	30.88
TraesCS4D01G129400.1	Wheat	plasma membrane	30.31	30.68
GSMUA_Achr9P24190_001	Banana	cytosol, peroxisome, plasma membrane	24.82	20.43

Protein Annotations

MapMan:5.9.1	GO:GO:0000003	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0007275	GO:GO:0008150	GO:GO:0009791	GO:GO:0009846	GO:GO:0009856
GO:GO:0009987	GO:GO:0010162	GO:GO:0010344	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0019915	GO:GO:0034389	GO:GO:0048316	GO:GO:0080155	GO:GO:0140042	EnsemblPlantsGene:GSMUA_Achr3G02430_001
EnsemblPlants:GSMUA_Achr3P02430_001	EnsemblPlants:GSMUA_Achr3T02430_001	UniProt:M0SB61	PFAM:PF06775	PANTHER:PTHR21212	InterPro:Seipin
TMHMM:TMhelix	UniParc:UPI0002948F6B	SEG:seg	:	:	:

Description

Putative protein of unknown function containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G02430_001]

Coordinates

chr3:+:1605289..1606622

Molecular Weight (calculated)

46633.1 Da

IEP (calculated)

8.992

GRAVY (calculated)

0.097

Length

419 amino acids

Sequence
(BLAST)

001: MDGETHHHVR PRRRALLSAV TPPSSSTVED TKYKEDDYSD DQLLTVPAGW MIKLVAIQVE LITSCFLSLI APFLYLYFQS QAVPSRFAHG VTALLRRLTF
101: GILGAVCAMV ILLAVMVVSV LLGVGLARLC VEEPVLLRQP LHFDYTQVHP NATVALRGAW RRGRAVPAGH SVSVSLMLLL PESDHNLRIG VFQVHAEVTS
201: STGNVIATSS QPCMLRFQSH PVRLMRTFVM GFPLLLGISS ESQRVAIEML GYKETRTRSE MVRVKLKPRA GTTELPQLYD AEVFMKSQLP WAKEVAHNWK
301: WTFYVWTSLY MYILLLILLV CCFKPFVMPR LRRYGAGGLA EVKKDSMDDH RIEREMSDKR LSDALRALRQ RGKRKALLRP ELVEGAASSV AGGEAMAASE
401: VIDDSGDFAA SESSECVGG

Best Arabidopsis Sequence Match ( AT5G16460.1 )
(BLAST)

001: MRILQNKTMK EQDNQLKIPE PLRADWFMVL VTIQADLIYN ALVVLSSPFF LLYRSYRRAV VTVSAAEKAV KRAPAQIAGG AGRVVRRTWF GILGACHVSM
101: VMVLALILAV VIGVGIVSLY VEKPVVVRDR LFFDYTEENP SAVFSFDKKK RSFSVPVGHS VHVSLVLWMP ESEINRRIGV FQLKVELLSL KGETIARSSQ
201: PCMLRFRSKP IRLARTFVMS VPLIAGIANE AQTMRIDALK HQEKMPRTKA VRATLIPRAQ TRTLPQLYEA EIVINSKPPW IKRMAYNWKW TLCVWTSMYL
301: YVAILTALLW CFRPVLFPYT SSRTISESEN LEIEVVEEEQ EQVMERRRRE RRNQPRRRNF ATTQKSYT

Arabidopsis Description

SEI1Seipin-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFD9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.