CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plasma membrane, endoplasmic reticulum

Predictor Summary:

nucleus 1
endoplasmic reticulum 2
extracellular 1
golgi 1
plasma membrane 2
vacuole 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, plasma membrane
Any Predictor:	cytosol, endoplasmic reticulum, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70695	Canola	plasma membrane	89.89	89.39
Bra006356.1-P	Field mustard	extracellular	66.57	87.13
CDY38111	Canola	plasma membrane	81.18	80.73
CDX85507	Canola	plasma membrane	76.4	75.98
AT5G16460.1	Thale cress	plasma membrane	75.28	72.83
KRH40303	Soybean	endoplasmic reticulum	43.82	38.33
VIT_04s0023g00480.t01	Wine grape	plasma membrane, plastid, vacuole	26.97	37.8
KRH00920	Soybean	endoplasmic reticulum	43.54	34.83
Solyc04g056380.2.1	Tomato	golgi, nucleus, plasma membrane	39.04	33.74
PGSC0003DMT400018729	Potato	golgi, peroxisome, plasma membrane	38.76	32.86
GSMUA_Achr3P02430_001	Banana	cytosol, peroxisome, vacuole	35.39	30.07
CDY43679	Canola	plasma membrane	28.65	29.31
CDY66765	Canola	cytosol, peroxisome, plasma membrane	29.21	28.42
OQU82879	Sorghum	plasma membrane	30.9	26.7
Os12t0148700-01	Rice	peroxisome, plasma membrane, plastid	30.06	26.16
HORVU4Hr1G025360.2	Barley	peroxisome, plasma membrane, plastid	28.93	24.88
TraesCS4B01G134700.1	Wheat	plasma membrane	28.37	24.75
TraesCS4D01G129400.1	Wheat	plasma membrane	28.37	24.4
TraesCS4A01G184000.1	Wheat	plasma membrane	28.09	24.15
CDX99851	Canola	mitochondrion	26.97	23.19
CDX90209	Canola	cytosol, nucleus, plasma membrane	27.53	19.25
CDY35278	Canola	cytosol, nucleus, plasma membrane	26.4	18.91

Protein Annotations

EnsemblPlants:CDX78692	EnsemblPlantsGene:GSBRNA2T00130119001	GO:A0A078CPM5	GO:GO:0008150	GO:GO:0019915	InterPro:Seipin
PANTHER:PTHR21212	PFAM:PF06775	ProteinID:CDX78692	ProteinID:CDX78692.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI0004EE4F6B	MapMan:5.9.1	:	:	:	:

Description

BnaA03g06040D

Coordinates

chrLK031815:-:1840435..1841721

Molecular Weight (calculated)

41292.2 Da

IEP (calculated)

10.485

GRAVY (calculated)

0.063

Length

356 amino acids

Sequence
(BLAST)

001: MEELDIDLKI PDPLRADWFM VLVDIQADLI YNALVVLTSP LYLLCRSYNR ATATISAAER AVKRAPSRIK SGAARVVRRI WYGLMGACQV SMVMVLALII
101: AAVLGIGVVS LYVEKPVVVR ERLFFDYTEE NPSAVFSFEK KKRPFGVPVG HKVHVSVVMW MPESDLNRRL GLFQLKVELL SLKGETIARS SQPCMLRFRS
201: KPIRLARTFV MSVPLVAGFA NEAQTMRIDA LVHQEKWPRT KAVRATLIPR AQTRLLPQLY EAEVVINSKP PWTKRMAYNW RWTLCVWTSM YLYVPILVAL
301: LWCFRPFLFP YVASRTVVET ERLEMEVVEE VMERRFRERR NKPRRRTFIT TQETYT

Best Arabidopsis Sequence Match ( AT5G16460.1 )
(BLAST)

001: MRILQNKTMK EQDNQLKIPE PLRADWFMVL VTIQADLIYN ALVVLSSPFF LLYRSYRRAV VTVSAAEKAV KRAPAQIAGG AGRVVRRTWF GILGACHVSM
101: VMVLALILAV VIGVGIVSLY VEKPVVVRDR LFFDYTEENP SAVFSFDKKK RSFSVPVGHS VHVSLVLWMP ESEINRRIGV FQLKVELLSL KGETIARSSQ
201: PCMLRFRSKP IRLARTFVMS VPLIAGIANE AQTMRIDALK HQEKMPRTKA VRATLIPRAQ TRTLPQLYEA EIVINSKPPW IKRMAYNWKW TLCVWTSMYL
301: YVAILTALLW CFRPVLFPYT SSRTISESEN LEIEVVEEEQ EQVMERRRRE RRNQPRRRNF ATTQKSYT

Arabidopsis Description

SEI1Seipin-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFD9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.