CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
mitochondrion 1
peroxisome 1
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	peroxisome
Plant-mPloc:	nucleus, plastid
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0148700-01	Rice	peroxisome, plasma membrane, plastid	57.04	57.46
TraesCS4B01G134700.1	Wheat	plasma membrane	54.13	54.66
TraesCS4A01G184000.1	Wheat	plasma membrane	53.88	53.62
TraesCS4D01G129400.1	Wheat	plasma membrane	53.64	53.38
HORVU4Hr1G025360.2	Barley	peroxisome, plasma membrane, plastid	53.16	52.9
Bra006356.1-P	Field mustard	extracellular	23.54	35.66
GSMUA_Achr3P02430_001	Banana	cytosol, peroxisome, vacuole	33.25	32.7
VIT_04s0023g00480.t01	Wine grape	plasma membrane, plastid, vacuole	20.15	32.68
CDX70695	Canola	plasma membrane	27.91	32.12
Bra023566.1-P	Field mustard	plasma membrane	27.18	31.46
CDX85507	Canola	plasma membrane	27.18	31.28
AT5G16460.1	Thale cress	plasma membrane	27.67	30.98
CDX78692	Canola	cytosol, endoplasmic reticulum, plasma membrane	26.7	30.9
CDY38111	Canola	plasma membrane	26.7	30.73
KRH40303	Soybean	endoplasmic reticulum	29.37	29.73
Solyc04g056380.2.1	Tomato	golgi, nucleus, plasma membrane	27.91	27.91
PGSC0003DMT400018729	Potato	golgi, peroxisome, plasma membrane	27.67	27.14
KRH00920	Soybean	endoplasmic reticulum	28.88	26.74
EER99253	Sorghum	plastid	22.82	20.09

Protein Annotations

EnsemblPlants:OQU82879	EnsemblPlantsGene:SORBI_3005G036200	EntrezGene:8069324	GO:GO:0005575	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0019915	InterPro:Seipin	PANTHER:PTHR21212	PANTHER:PTHR21212:SF0	PFAM:PF06775
ProteinID:OQU82879	ProteinID:OQU82879.1	RefSeq:XP_002448997.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0001A86225
UniProt:A0A1Z5RH06	MapMan:5.9.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:3279671..3281397

Molecular Weight (calculated)

44501.9 Da

IEP (calculated)

10.083

GRAVY (calculated)

0.150

Length

412 amino acids

Sequence
(BLAST)

001: MEYSTPHQVS RYQHGYSGDG HYTGRPRSTA GGESDDALLF LAVPAGWLIR LLAFLGELVA SAILSLVFPV AALVGALRAL PAAVASNLRR TARGLLAAAC
101: TFVALVAALL MSVLLGFVLV RHWVEDPVTL RQQLFFDYTE AQPSAAVVLG GGARGAAAGA VLPAGHSVRV SMALLLPDSY HNREVGMFQI KAEAVSVSGI
201: TMASATQPYM LRYKSTPVRL AQSALLCVPL TLGIRSETQA ANLKVLQYRE GRGRDKRTGA IRVLLQPRAA TVQLPQVYRA EVVVQTALPW AKSLARGLKW
301: TLCVWVSSSV YFALIVLAVC WARPLAVSAR NRRLSELQVD GKIPSDLGSG DIGESSSKEV SEDFAVKWRE RRSRWKSQFR TRLHGGSMEL ESTEGSTSNI
401: AVVETSEAMN DP

Best Arabidopsis Sequence Match ( AT5G16460.1 )
(BLAST)

001: MRILQNKTMK EQDNQLKIPE PLRADWFMVL VTIQADLIYN ALVVLSSPFF LLYRSYRRAV VTVSAAEKAV KRAPAQIAGG AGRVVRRTWF GILGACHVSM
101: VMVLALILAV VIGVGIVSLY VEKPVVVRDR LFFDYTEENP SAVFSFDKKK RSFSVPVGHS VHVSLVLWMP ESEINRRIGV FQLKVELLSL KGETIARSSQ
201: PCMLRFRSKP IRLARTFVMS VPLIAGIANE AQTMRIDALK HQEKMPRTKA VRATLIPRAQ TRTLPQLYEA EIVINSKPPW IKRMAYNWKW TLCVWTSMYL
301: YVAILTALLW CFRPVLFPYT SSRTISESEN LEIEVVEEEQ EQVMERRRRE RRNQPRRRNF ATTQKSYT

Arabidopsis Description

SEI1Seipin-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFD9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.