CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
endoplasmic reticulum 2
extracellular 1
golgi 1
plasma membrane 3
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	endoplasmic reticulum, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78692	Canola	cytosol, endoplasmic reticulum, plasma membrane	89.39	89.89
Bra006356.1-P	Field mustard	extracellular	64.8	85.29
CDY38111	Canola	plasma membrane	78.49	78.49
CDX85507	Canola	plasma membrane	76.54	76.54
AT5G16460.1	Thale cress	plasma membrane	75.7	73.64
KRH40303	Soybean	endoplasmic reticulum	43.3	38.08
VIT_04s0023g00480.t01	Wine grape	plasma membrane, plastid, vacuole	26.82	37.8
KRH00920	Soybean	endoplasmic reticulum	43.3	34.83
Solyc04g056380.2.1	Tomato	golgi, nucleus, plasma membrane	38.55	33.5
PGSC0003DMT400018729	Potato	golgi, peroxisome, plasma membrane	39.11	33.33
GSMUA_Achr3P02430_001	Banana	cytosol, peroxisome, vacuole	34.64	29.59
CDY43679	Canola	plasma membrane	27.65	28.45
OQU82879	Sorghum	plasma membrane	32.12	27.91
CDY66765	Canola	cytosol, peroxisome, plasma membrane	28.21	27.6
Os12t0148700-01	Rice	peroxisome, plasma membrane, plastid	30.45	26.65
HORVU4Hr1G025360.2	Barley	peroxisome, plasma membrane, plastid	29.61	25.6
TraesCS4B01G134700.1	Wheat	plasma membrane	28.77	25.25
TraesCS4D01G129400.1	Wheat	plasma membrane	28.77	24.88
TraesCS4A01G184000.1	Wheat	plasma membrane	28.49	24.64
CDX99851	Canola	mitochondrion	27.09	23.43
CDX90209	Canola	cytosol, nucleus, plasma membrane	27.09	19.06
CDY35278	Canola	cytosol, nucleus, plasma membrane	25.98	18.71

Protein Annotations

EnsemblPlants:CDX70695	EnsemblPlantsGene:GSBRNA2T00140558001	GO:A0A078C1B4	GO:GO:0008150	GO:GO:0019915	InterPro:Seipin
PANTHER:PTHR21212	PFAM:PF06775	ProteinID:CDX70695	ProteinID:CDX70695.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI0004EECA8D	MapMan:5.9.1	:	:	:	:

Description

BnaC03g07790D

Coordinates

chrLK031791:-:1578310..1579547

Molecular Weight (calculated)

41530.3 Da

IEP (calculated)

10.438

GRAVY (calculated)

0.027

Length

358 amino acids

Sequence
(BLAST)

001: MEELNIDLKI PDPLRADWFM ALVDIQADLI YNALVVLTSP LYLLYRSYNR ATATISAAER AVKRAPSRIK SSAARVVRRT WYGLMGACHV SMVMVLALII
101: AAVLGIGVVS LYVEKPVVVR ERLFFDYTEE NPSAVFSFDK KKRPFGVPVG HKVHVYLVLW MPESDLNRRL GLFQLKVELL SLKGETIARS SQPCMLRFRS
201: KPIRLARTFV MSVPLIAGFA NEAQTMRIDA LVHQEKWPRT KAVRATLIPR AQTRLLPQLY EAEVVINSKP PWTKRMAYNW KWTLCVWTSM YLYVPILVAL
301: LWCFRPLLFP YVASSRTVAE TERLEMEVVE EEVIERRFRE RRNKPRRRTF ITTQETYT

Best Arabidopsis Sequence Match ( AT5G16460.1 )
(BLAST)

001: MRILQNKTMK EQDNQLKIPE PLRADWFMVL VTIQADLIYN ALVVLSSPFF LLYRSYRRAV VTVSAAEKAV KRAPAQIAGG AGRVVRRTWF GILGACHVSM
101: VMVLALILAV VIGVGIVSLY VEKPVVVRDR LFFDYTEENP SAVFSFDKKK RSFSVPVGHS VHVSLVLWMP ESEINRRIGV FQLKVELLSL KGETIARSSQ
201: PCMLRFRSKP IRLARTFVMS VPLIAGIANE AQTMRIDALK HQEKMPRTKA VRATLIPRAQ TRTLPQLYEA EIVINSKPPW IKRMAYNWKW TLCVWTSMYL
301: YVAILTALLW CFRPVLFPYT SSRTISESEN LEIEVVEEEQ EQVMERRRRE RRNQPRRRNF ATTQKSYT

Arabidopsis Description

SEI1Seipin-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFD9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.