Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006356.1-P | Field mustard | extracellular | 59.24 | 80.15 |
| CDX70695 | Canola | plasma membrane | 73.64 | 75.7 |
| CDX78692 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 72.83 | 75.28 |
| Bra023566.1-P | Field mustard | plasma membrane | 70.11 | 72.47 |
| CDX85507 | Canola | plasma membrane | 69.84 | 71.79 |
| CDY38111 | Canola | plasma membrane | 69.57 | 71.51 |
| VIT_04s0023g00480.t01 | Wine grape | plasma membrane, plastid, vacuole | 27.17 | 39.37 |
| KRH40303 | Soybean | endoplasmic reticulum | 42.66 | 38.57 |
| KRH00920 | Soybean | endoplasmic reticulum | 44.29 | 36.63 |
| Solyc04g056380.2.1 | Tomato | golgi, nucleus, plasma membrane | 37.23 | 33.25 |
| GSMUA_Achr3P02430_001 | Banana | cytosol, peroxisome, vacuole | 36.41 | 31.98 |
| PGSC0003DMT400018729 | Potato | golgi, peroxisome, plasma membrane | 36.14 | 31.67 |
| OQU82879 | Sorghum | plasma membrane | 30.98 | 27.67 |
| Os12t0148700-01 | Rice | peroxisome, plasma membrane, plastid | 30.43 | 27.38 |
| HORVU4Hr1G025360.2 | Barley | peroxisome, plasma membrane, plastid | 29.35 | 26.09 |
| TraesCS4D01G129400.1 | Wheat | plasma membrane | 28.8 | 25.6 |
| TraesCS4B01G134700.1 | Wheat | plasma membrane | 28.26 | 25.49 |
| TraesCS4A01G184000.1 | Wheat | plasma membrane | 28.53 | 25.36 |
| AT1G29760.1 | Thale cress | cytosol, nucleus, plasma membrane | 23.64 | 16.54 |
| AT2G34380.1 | Thale cress | cytosol, nucleus, plasma membrane | 22.55 | 16.31 |
Protein Annotations
| MapMan:5.9.1 | EntrezGene:831507 | ProteinID:AED92296.1 | ArrayExpress:AT5G16460 | EnsemblPlantsGene:AT5G16460 | RefSeq:AT5G16460 |
| TAIR:AT5G16460 | RefSeq:AT5G16460-TAIR-G | EnsemblPlants:AT5G16460.1 | TAIR:AT5G16460.1 | Unigene:At.54867 | ProteinID:BAB09613.1 |
| ncoils:Coil | GO:GO:0000003 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0005789 | GO:GO:0006629 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009791 | GO:GO:0009846 | GO:GO:0009856 | GO:GO:0009987 | GO:GO:0010162 | GO:GO:0010344 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0019915 | GO:GO:0034389 | GO:GO:0048316 |
| GO:GO:0080155 | GO:GO:0140042 | RefSeq:NP_197150.1 | PFAM:PF06775 | PANTHER:PTHR21212 | UniProt:Q9FFD9 |
| InterPro:Seipin | TMHMM:TMhelix | UniParc:UPI00000A1FB8 | SEG:seg | : | : |
Description
SEI1Seipin-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFD9]
Coordinates
chr5:-:5376961..5378533
Molecular Weight (calculated)
42481.5 Da
IEP (calculated)
10.778
GRAVY (calculated)
-0.026
Length
368 amino acids
Sequence
(BLAST)
(BLAST)
001: MRILQNKTMK EQDNQLKIPE PLRADWFMVL VTIQADLIYN ALVVLSSPFF LLYRSYRRAV VTVSAAEKAV KRAPAQIAGG AGRVVRRTWF GILGACHVSM
101: VMVLALILAV VIGVGIVSLY VEKPVVVRDR LFFDYTEENP SAVFSFDKKK RSFSVPVGHS VHVSLVLWMP ESEINRRIGV FQLKVELLSL KGETIARSSQ
201: PCMLRFRSKP IRLARTFVMS VPLIAGIANE AQTMRIDALK HQEKMPRTKA VRATLIPRAQ TRTLPQLYEA EIVINSKPPW IKRMAYNWKW TLCVWTSMYL
301: YVAILTALLW CFRPVLFPYT SSRTISESEN LEIEVVEEEQ EQVMERRRRE RRNQPRRRNF ATTQKSYT
101: VMVLALILAV VIGVGIVSLY VEKPVVVRDR LFFDYTEENP SAVFSFDKKK RSFSVPVGHS VHVSLVLWMP ESEINRRIGV FQLKVELLSL KGETIARSSQ
201: PCMLRFRSKP IRLARTFVMS VPLIAGIANE AQTMRIDALK HQEKMPRTKA VRATLIPRAQ TRTLPQLYEA EIVINSKPPW IKRMAYNWKW TLCVWTSMYL
301: YVAILTALLW CFRPVLFPYT SSRTISESEN LEIEVVEEEQ EQVMERRRRE RRNQPRRRNF ATTQKSYT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.