Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- peroxisome 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G129400.1 | Wheat | plasma membrane | 88.97 | 87.68 |
| TraesCS4A01G184000.1 | Wheat | plasma membrane | 88.73 | 87.44 |
| HORVU4Hr1G025360.2 | Barley | peroxisome, plasma membrane, plastid | 82.11 | 80.92 |
| OQU82879 | Sorghum | plasma membrane | 54.66 | 54.13 |
| Os12t0148700-01 | Rice | peroxisome, plasma membrane, plastid | 52.7 | 52.57 |
| Bra006356.1-P | Field mustard | extracellular | 21.81 | 32.72 |
| VIT_04s0023g00480.t01 | Wine grape | plasma membrane, plastid, vacuole | 19.85 | 31.89 |
| Bra023566.1-P | Field mustard | plasma membrane | 26.96 | 30.9 |
| CDX85507 | Canola | plasma membrane | 26.72 | 30.45 |
| CDY38111 | Canola | plasma membrane | 26.47 | 30.17 |
| GSMUA_Achr3P02430_001 | Banana | cytosol, peroxisome, vacuole | 30.88 | 30.07 |
| CDX70695 | Canola | plasma membrane | 25.25 | 28.77 |
| CDX78692 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 24.75 | 28.37 |
| AT5G16460.1 | Thale cress | plasma membrane | 25.49 | 28.26 |
| KRH40303 | Soybean | endoplasmic reticulum | 27.45 | 27.52 |
| Solyc04g056380.2.1 | Tomato | golgi, nucleus, plasma membrane | 26.72 | 26.46 |
| PGSC0003DMT400018729 | Potato | golgi, peroxisome, plasma membrane | 26.47 | 25.71 |
| KRH00920 | Soybean | endoplasmic reticulum | 27.94 | 25.62 |
| TraesCS5B01G323400.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 22.06 | 17.18 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G134700.1 | EnsemblPlantsGene:TraesCS4B01G134700 | GO:GO:0008150 | GO:GO:0019915 | InterPro:Seipin | PANTHER:PTHR21212 |
| PANTHER:PTHR21212:SF0 | PFAM:PF06775 | SEG:seg | TMHMM:TMhelix | MapMan:5.9.1 | : |
Description
No Description!
Coordinates
chr4B:+:175544184..175545497
Molecular Weight (calculated)
44427.7 Da
IEP (calculated)
10.197
GRAVY (calculated)
0.089
Length
408 amino acids
Sequence
(BLAST)
(BLAST)
001: MLTWSSYPMD PGPHHPSTYN HHHHYPFLPA AGPPTAGGDT LLFLLAIPAG WLVRLVAFLG ERVISAVLTL VVLPGATLVG ELRTVPAAAA SLARRAAVGV
101: LAAAFTFAAL AVALVASLLL GFVLIRHWVE DPVTVRQPLY FDYTEPQPSA AVALVPPAGH SVRVSMSLLL PDSDHNRQIG VFQIKTEAIT PSGSTVASAT
201: QPYMLRYKSA PVRLAQSALT IVPLALGMRS ESQSATLKLL QYWEGHGRHK RTRLIRVSLQ PRAMTVHLPQ VYRAEITVQT ALPWFKAVAR SLKWTMCVWL
301: SFWVYVILSL LAVRWVWPLA VSAWDSHRGL SDRQVNGKTI AANQGGGDIG QSSHEGSSRG GAVRWRDRRG RRKAQQTPHG GMVELKLDEG SSYSSAVAET
401: DEVVDDES
101: LAAAFTFAAL AVALVASLLL GFVLIRHWVE DPVTVRQPLY FDYTEPQPSA AVALVPPAGH SVRVSMSLLL PDSDHNRQIG VFQIKTEAIT PSGSTVASAT
201: QPYMLRYKSA PVRLAQSALT IVPLALGMRS ESQSATLKLL QYWEGHGRHK RTRLIRVSLQ PRAMTVHLPQ VYRAEITVQT ALPWFKAVAR SLKWTMCVWL
301: SFWVYVILSL LAVRWVWPLA VSAWDSHRGL SDRQVNGKTI AANQGGGDIG QSSHEGSSRG GAVRWRDRRG RRKAQQTPHG GMVELKLDEG SSYSSAVAET
401: DEVVDDES
001: MRILQNKTMK EQDNQLKIPE PLRADWFMVL VTIQADLIYN ALVVLSSPFF LLYRSYRRAV VTVSAAEKAV KRAPAQIAGG AGRVVRRTWF GILGACHVSM
101: VMVLALILAV VIGVGIVSLY VEKPVVVRDR LFFDYTEENP SAVFSFDKKK RSFSVPVGHS VHVSLVLWMP ESEINRRIGV FQLKVELLSL KGETIARSSQ
201: PCMLRFRSKP IRLARTFVMS VPLIAGIANE AQTMRIDALK HQEKMPRTKA VRATLIPRAQ TRTLPQLYEA EIVINSKPPW IKRMAYNWKW TLCVWTSMYL
301: YVAILTALLW CFRPVLFPYT SSRTISESEN LEIEVVEEEQ EQVMERRRRE RRNQPRRRNF ATTQKSYT
101: VMVLALILAV VIGVGIVSLY VEKPVVVRDR LFFDYTEENP SAVFSFDKKK RSFSVPVGHS VHVSLVLWMP ESEINRRIGV FQLKVELLSL KGETIARSSQ
201: PCMLRFRSKP IRLARTFVMS VPLIAGIANE AQTMRIDALK HQEKMPRTKA VRATLIPRAQ TRTLPQLYEA EIVINSKPPW IKRMAYNWKW TLCVWTSMYL
301: YVAILTALLW CFRPVLFPYT SSRTISESEN LEIEVVEEEQ EQVMERRRRE RRNQPRRRNF ATTQKSYT
Arabidopsis Description
SEI1Seipin-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFD9]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.