Factsheet for HORVU4Hr1G025360.2

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, plasma membrane

Predictor Summary:

nucleus 2
plastid 2
peroxisome 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome, plasma membrane, plastid
Any Predictor:	nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	peroxisome
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G129400.1	Wheat	plasma membrane	82.13	82.13
TraesCS4B01G134700.1	Wheat	plasma membrane	80.92	82.11
TraesCS4A01G184000.1	Wheat	plasma membrane	81.16	81.16
Os12t0148700-01	Rice	peroxisome, plasma membrane, plastid	54.59	55.26
OQU82879	Sorghum	plasma membrane	52.9	53.16
VIT_04s0023g00480.t01	Wine grape	plasma membrane, plastid, vacuole	21.01	34.25
Bra006356.1-P	Field mustard	extracellular	22.22	33.82
Bra023566.1-P	Field mustard	plasma membrane	27.78	32.3
CDX85507	Canola	plasma membrane	27.29	31.56
CDY38111	Canola	plasma membrane	27.05	31.28
GSMUA_Achr3P02430_001	Banana	cytosol, peroxisome, vacuole	31.16	30.79
CDX70695	Canola	plasma membrane	25.6	29.61
AT5G16460.1	Thale cress	plasma membrane	26.09	29.35
KRH40303	Soybean	endoplasmic reticulum	28.74	29.24
CDX78692	Canola	cytosol, endoplasmic reticulum, plasma membrane	24.88	28.93
Solyc04g056380.2.1	Tomato	golgi, nucleus, plasma membrane	26.81	26.94
PGSC0003DMT400018729	Potato	golgi, peroxisome, plasma membrane	26.81	26.43
KRH00920	Soybean	endoplasmic reticulum	28.26	26.29
HORVU5Hr1G082480.1	Barley	mitochondrion	21.26	19.05

Protein Annotations

EMBL:AK376499	EnsemblPlants:HORVU4Hr1G025360.2	EnsemblPlantsGene:HORVU4Hr1G025360	GO:GO:0005575	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0019915	InterPro:Seipin	PANTHER:PTHR21212	PANTHER:PTHR21212:SF0	PFAM:PF06775
SEG:seg	TMHMM:TMhelix	UniParc:UPI0002008FC9	UniProt:F2EK22	MapMan:5.9.1	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2EK22]

Coordinates

chrchr4H:+:147300402..147305603

Molecular Weight (calculated)

44759.0 Da

IEP (calculated)

8.488

GRAVY (calculated)

0.164

Length

414 amino acids

Sequence
(BLAST)

001: MDPGPHNPST YNHHHDYPFL PAAGAPTAGG DALLFLAIPA GWLIRLVAFL GERVISAVLT LVVLPVAALV GELRTVPAAT ASFARRAAVG VLAAAFTFAA
101: LAVALVASLL LGFVLIRHWV EDPVTVRQPL YFDYTEPQPS AAVALGSPAG HSVWVSMSLL LPDSDHNRQI GVFQIKAEAI TPGGSTIASA TQPYMLRYKS
201: APVRLAQSAL TIVPLALGIR SESQSATLKL LHYWEGHARH RRTRLIRVSL QPRAMTVHLP QVYRAEITVQ TALPWFKAVA RSLKWTMCVW VSFCVYVILS
301: LLAVCWVRPL ALSAWDSHRG LLDHQVNEKT IDANLCGGDI GQSSHEGSSR GGALKWRDRR GSRRKSQQTM HGDMVELKLD EGSASSSAVA DTDEVVDSDH
401: GEPPAAPLFV SESC

Best Arabidopsis Sequence Match ( AT5G16460.1 )
(BLAST)

001: MRILQNKTMK EQDNQLKIPE PLRADWFMVL VTIQADLIYN ALVVLSSPFF LLYRSYRRAV VTVSAAEKAV KRAPAQIAGG AGRVVRRTWF GILGACHVSM
101: VMVLALILAV VIGVGIVSLY VEKPVVVRDR LFFDYTEENP SAVFSFDKKK RSFSVPVGHS VHVSLVLWMP ESEINRRIGV FQLKVELLSL KGETIARSSQ
201: PCMLRFRSKP IRLARTFVMS VPLIAGIANE AQTMRIDALK HQEKMPRTKA VRATLIPRAQ TRTLPQLYEA EIVINSKPPW IKRMAYNWKW TLCVWTSMYL
301: YVAILTALLW CFRPVLFPYT SSRTISESEN LEIEVVEEEQ EQVMERRRRE RRNQPRRRNF ATTQKSYT

Arabidopsis Description

SEI1Seipin-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFD9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.