Factsheet for Solyc04g056380.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, nucleus

Predictor Summary:

nucleus 2
golgi 2
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, nucleus, plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400018729	Potato	golgi, peroxisome, plasma membrane	75.49	74.05
VIT_04s0023g00480.t01	Wine grape	plasma membrane, plastid, vacuole	33.25	53.94
Bra006356.1-P	Field mustard	extracellular	29.61	44.85
KRH40303	Soybean	endoplasmic reticulum	41.26	41.77
CDX78692	Canola	cytosol, endoplasmic reticulum, plasma membrane	33.74	39.04
CDY38111	Canola	plasma membrane	33.74	38.83
KRH00920	Soybean	endoplasmic reticulum	41.75	38.65
CDX70695	Canola	plasma membrane	33.5	38.55
Bra023566.1-P	Field mustard	plasma membrane	33.01	38.2
CDX85507	Canola	plasma membrane	33.01	37.99
AT5G16460.1	Thale cress	plasma membrane	33.25	37.23
GSMUA_Achr3P02430_001	Banana	cytosol, peroxisome, vacuole	34.22	33.65
Os12t0148700-01	Rice	peroxisome, plasma membrane, plastid	28.4	28.61
OQU82879	Sorghum	plasma membrane	27.91	27.91
HORVU4Hr1G025360.2	Barley	peroxisome, plasma membrane, plastid	26.94	26.81
TraesCS4B01G134700.1	Wheat	plasma membrane	26.46	26.72
TraesCS4A01G184000.1	Wheat	plasma membrane	26.7	26.57
TraesCS4D01G129400.1	Wheat	plasma membrane	26.7	26.57
Solyc07g062230.2.1	Tomato	cytosol, peroxisome, plasma membrane	21.36	19.38
Solyc02g071900.2.1	Tomato	cytosol	23.06	16.93

Protein Annotations

MapMan:5.9.1	GO:GO:0000003	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0007275	GO:GO:0008150	GO:GO:0009791	GO:GO:0009846	GO:GO:0009856
GO:GO:0009987	GO:GO:0010162	GO:GO:0010344	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0019915	GO:GO:0034389	GO:GO:0048316	GO:GO:0080155	GO:GO:0140042	UniProt:K4BST6
PFAM:PF06775	PANTHER:PTHR21212	InterPro:Seipin	EnsemblPlantsGene:Solyc04g056380.2	EnsemblPlants:Solyc04g056380.2.1	TMHMM:TMhelix
UniParc:UPI0002765C64	SEG:seg	:	:	:	:

Description

Seipin-1 [Source:Projected from Arabidopsis thaliana (AT5G16460) UniProtKB/Swiss-Prot;Acc:Q9FFD9]

Coordinates

chr4:+:54160438..54164277

Molecular Weight (calculated)

46331.0 Da

IEP (calculated)

4.828

GRAVY (calculated)

0.052

Length

412 amino acids

Sequence
(BLAST)

001: MISMEEKNEQ EEEYNEDELL KNNNSSVQNS SSSNWFIKML SSQAEIITTV FISLVSPIFY ILSFANIFEE EEESEKKVSV AVHVVATVSS KLLHGVALLL
101: KKFGAGILGA AYVAIVLISL LMVSGILGFG FVRMWMEEPV ILREPLYFDY ADGNPKAVFS FGGGYDNDAG VPLGHTMYVS LFLLMPESDF NRDIGVFQLV
201: AESLSKEGLV MATSSHPCML RFRSLPIRLM REFIMSVPLV LGLTAETQTI VVTMLKHKEG LPRTEAIRIT MIPRAGTFGL PQLYQSQIIL KSQPPWYKNL
301: VYKWKWTISV WASMYMYATL LVILLSWCRP LVFPVIATSF MTSADVNSTA EAPEEPQEEG REESDVSESV RRWRQSRRKR KAMLQQSVSP EFADDSASSI
401: SITREDTADS SE

Best Arabidopsis Sequence Match ( AT5G16460.1 )
(BLAST)

001: MRILQNKTMK EQDNQLKIPE PLRADWFMVL VTIQADLIYN ALVVLSSPFF LLYRSYRRAV VTVSAAEKAV KRAPAQIAGG AGRVVRRTWF GILGACHVSM
101: VMVLALILAV VIGVGIVSLY VEKPVVVRDR LFFDYTEENP SAVFSFDKKK RSFSVPVGHS VHVSLVLWMP ESEINRRIGV FQLKVELLSL KGETIARSSQ
201: PCMLRFRSKP IRLARTFVMS VPLIAGIANE AQTMRIDALK HQEKMPRTKA VRATLIPRAQ TRTLPQLYEA EIVINSKPPW IKRMAYNWKW TLCVWTSMYL
301: YVAILTALLW CFRPVLFPYT SSRTISESEN LEIEVVEEEQ EQVMERRRRE RRNQPRRRNF ATTQKSYT

Arabidopsis Description

SEI1Seipin-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFD9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.