Factsheet for VIT_04s0023g00480.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, vacuole

Predictor Summary:

nucleus 2
vacuole 1
mitochondrion 1
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006356.1-P	Field mustard	extracellular	38.19	35.66
KRH40303	Soybean	endoplasmic reticulum	55.51	34.64
Solyc04g056380.2.1	Tomato	golgi, nucleus, plasma membrane	53.94	33.25
KRH00920	Soybean	endoplasmic reticulum	54.72	31.24
PGSC0003DMT400018729	Potato	golgi, peroxisome, plasma membrane	51.18	30.95
CDY38111	Canola	plasma membrane	38.98	27.65
Bra023566.1-P	Field mustard	plasma membrane	38.19	27.25
AT5G16460.1	Thale cress	plasma membrane	39.37	27.17
CDX78692	Canola	cytosol, endoplasmic reticulum, plasma membrane	37.8	26.97
CDX70695	Canola	plasma membrane	37.8	26.82
CDX85507	Canola	plasma membrane	37.8	26.82
GSMUA_Achr3P02430_001	Banana	cytosol, peroxisome, vacuole	42.13	25.54
VIT_10s0003g01840.t01	Wine grape	plasma membrane	24.8	21.28
Os12t0148700-01	Rice	peroxisome, plasma membrane, plastid	34.25	21.27
HORVU4Hr1G025360.2	Barley	peroxisome, plasma membrane, plastid	34.25	21.01
TraesCS4A01G184000.1	Wheat	plasma membrane	33.07	20.29
OQU82879	Sorghum	plasma membrane	32.68	20.15
TraesCS4D01G129400.1	Wheat	plasma membrane	32.68	20.05
TraesCS4B01G134700.1	Wheat	plasma membrane	31.89	19.85
VIT_19s0014g00840.t01	Wine grape	plasma membrane	24.8	12.26

Protein Annotations

EntrezGene:100263320	wikigene:100263320	MapMan:5.9.1	EMBL:AM469941	ProteinID:CAN83562	ProteinID:CAN83562.1
ProteinID:CBI17637	ProteinID:CBI17637.3	UniProt:D7SPQ8	EMBL:FN594959	GO:GO:0000003	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0007275	GO:GO:0008150
GO:GO:0009791	GO:GO:0009846	GO:GO:0009856	GO:GO:0009987	GO:GO:0010162	GO:GO:0010344
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0019915	GO:GO:0034389	GO:GO:0048316
GO:GO:0080155	GO:GO:0140042	EntrezGene:LOC100263320	wikigene:LOC100263320	PFAM:PF06775	PANTHER:PTHR21212
InterPro:Seipin	TMHMM:TMhelix	UniParc:UPI0001BE14B2	ArrayExpress:VIT_04s0023g00480	EnsemblPlantsGene:VIT_04s0023g00480	EnsemblPlants:VIT_04s0023g00480.t01
RefSeq:XP_002272148	RefSeq:XP_002272148.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4:+:16695702..16700045

Molecular Weight (calculated)

29032.3 Da

IEP (calculated)

8.612

GRAVY (calculated)

-0.145

Length

254 amino acids

Sequence
(BLAST)

001: MGVPLGHTFY VSLRLLMPES DFNRDVGVFQ LTAEVMSING DVIAKSSHPC MLRFRSLPVQ LTRTFLMGVP LLLGISSETQ ELTIEILKHK EGYSRTKAIR
101: VTLIPRAGTL SLPQIYEAEL LMNSQLPWKK KLVHSWKWTF YVWMSLYVYI MLLVVLMCCF RPVLFPVTTA SQRDHNERDL TMEVSKEPDS RARDAREASE
201: SLKRWQRSRN KRKVDVLQKL QPETVGSSAS SITITREDTS AFVEEDVGDS ESVC

Best Arabidopsis Sequence Match ( AT5G16460.1 )
(BLAST)

001: MRILQNKTMK EQDNQLKIPE PLRADWFMVL VTIQADLIYN ALVVLSSPFF LLYRSYRRAV VTVSAAEKAV KRAPAQIAGG AGRVVRRTWF GILGACHVSM
101: VMVLALILAV VIGVGIVSLY VEKPVVVRDR LFFDYTEENP SAVFSFDKKK RSFSVPVGHS VHVSLVLWMP ESEINRRIGV FQLKVELLSL KGETIARSSQ
201: PCMLRFRSKP IRLARTFVMS VPLIAGIANE AQTMRIDALK HQEKMPRTKA VRATLIPRAQ TRTLPQLYEA EIVINSKPPW IKRMAYNWKW TLCVWTSMYL
301: YVAILTALLW CFRPVLFPYT SSRTISESEN LEIEVVEEEQ EQVMERRRRE RRNQPRRRNF ATTQKSYT

Arabidopsis Description

SEI1Seipin-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFD9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.