Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- plasma membrane 3
- mitochondrion 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_10s0003g01840.t01 | Wine grape | plasma membrane | 28.6 | 49.66 |
| Solyc07g062230.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 32.88 | 37.22 |
| PGSC0003DMT400018200 | Potato | cytosol, nucleus, peroxisome | 33.27 | 36.93 |
| Os09t0534000-01 | Rice | cytosol, nucleus, plasma membrane, plastid | 29.77 | 33.48 |
| EER99253 | Sorghum | plastid | 30.35 | 33.33 |
| Zm00001d021305_P001 | Maize | plastid | 29.77 | 33.12 |
| GSMUA_Achr9P24190_001 | Banana | cytosol, peroxisome, plasma membrane | 31.32 | 31.63 |
| TraesCS5A01G322900.1 | Wheat | cytosol, nucleus, vacuole | 27.43 | 30.39 |
| HORVU5Hr1G082480.1 | Barley | mitochondrion | 27.24 | 30.3 |
| TraesCS5B01G323400.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 27.63 | 27.1 |
| VIT_04s0023g00480.t01 | Wine grape | plasma membrane, plastid, vacuole | 12.26 | 24.8 |
Protein Annotations
| EntrezGene:100265810 | wikigene:100265810 | MapMan:5.9.1 | EMBL:AM480729 | ProteinID:CAN81778 | ProteinID:CAN81778.1 |
| ProteinID:CCB46218 | ProteinID:CCB46218.1 | UniProt:F6H1V4 | EMBL:FN595229 | GO:GO:0005575 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0019915 | EntrezGene:LOC100265810 | wikigene:LOC100265810 | PFAM:PF06775 |
| PANTHER:PTHR21212 | PANTHER:PTHR21212:SF3 | InterPro:Seipin | TMHMM:TMhelix | UniParc:UPI00019856FA | ArrayExpress:VIT_19s0014g00840 |
| EnsemblPlantsGene:VIT_19s0014g00840 | EnsemblPlants:VIT_19s0014g00840.t01 | RefSeq:XP_002283445 | RefSeq:XP_002283445.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr19:+:865947..867580
Molecular Weight (calculated)
58708.4 Da
IEP (calculated)
9.583
GRAVY (calculated)
0.075
Length
514 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDSKILDND RIDKMDRGFV NDLDEFRNFS GKNDVNLGGF ANVLKLFLLK NVGHGVDTLF LARKFRETNT RRTCSCGRLW DGNGNGVEER RKKSEFSSQN
101: NQKVCEEPEI KASQPSLFRY GSTSQRKEDY INVSKGLYHE FPLNFITFLA ILLMKSLGFQ INLLVTFLKF PLYLSYFWFM LMMFPFQTLK HIRSYLMKKV
201: TRMWDTLSTS VTSFVFVRIN APKSVVKMAV RMSRAFLCSI YVCCVLIGLL VSGFLMGILL MRTIVEEPVQ ATRTLNFDYT KASPVAFVPM ISQNLPLDLV
301: AGDEDVKNVQ ARAIPYNHNL QLTVSLTLPE SEYNQKLGVF QVKVEFLSTN GEVTATQSHP CILRYKSQPI RHIQTFIMAG PLLAGFESES QTLNIKMAEF
401: TEGLEPTACL KVSLVQRAEF QPGAGIPEIH AATVALESEL PQLKRVIWIW RRTILVWASF VLFLMELVLM LVIYRPIIIP RGRQQQARLV GIKEDCQPKA
501: IAWYKGMVLM MIMA
101: NQKVCEEPEI KASQPSLFRY GSTSQRKEDY INVSKGLYHE FPLNFITFLA ILLMKSLGFQ INLLVTFLKF PLYLSYFWFM LMMFPFQTLK HIRSYLMKKV
201: TRMWDTLSTS VTSFVFVRIN APKSVVKMAV RMSRAFLCSI YVCCVLIGLL VSGFLMGILL MRTIVEEPVQ ATRTLNFDYT KASPVAFVPM ISQNLPLDLV
301: AGDEDVKNVQ ARAIPYNHNL QLTVSLTLPE SEYNQKLGVF QVKVEFLSTN GEVTATQSHP CILRYKSQPI RHIQTFIMAG PLLAGFESES QTLNIKMAEF
401: TEGLEPTACL KVSLVQRAEF QPGAGIPEIH AATVALESEL PQLKRVIWIW RRTILVWASF VLFLMELVLM LVIYRPIIIP RGRQQQARLV GIKEDCQPKA
501: IAWYKGMVLM MIMA
001: MESESESSST HSSCDRFLDA EDEFFYDSFS NHYDCLNSSP PANLRRRRLP MDTDSSSSSS TSSLESCEKR STVGENDELE VSLVDFETIE IDVDVTDSAN
101: SSIDSISEKG EDFEVIDSCT DTEKNMGEND SGRVDPFTVT TLNDERGEIY TGPEYTSTDW SLTSLVIRSI EFQVSLMITF IRFPPWLISK CLSFVFDPYR
201: TMRRGRRYLV SWIVGLCDSG LKDDKPVLEL VRRVTWGLFC AVYVGIMLFA LLVSAFMISG FVITYLAHEP LVIKESLNFD YTKSSPEAYV PISSCAGVAF
301: GLSGKESIET GKVKGLKDRT EITVSMTLPE SEYNRNLGMF QVRVDFLSAS GHVLASSRRP CMVKFSSEPI RLVQTLLKIA PLVTGYVSEI QTLNLKLKGL
401: VEKDIIPTAC LKIMIEQRAE FRPGAGIPEI YDASLFLESK LPFLKRIIWN WRKTLFVWIS MSLFIMELLF ALVFFRPLII PRTGQRTQQR DGTHSINNNL
501: YLDGQAGSR
101: SSIDSISEKG EDFEVIDSCT DTEKNMGEND SGRVDPFTVT TLNDERGEIY TGPEYTSTDW SLTSLVIRSI EFQVSLMITF IRFPPWLISK CLSFVFDPYR
201: TMRRGRRYLV SWIVGLCDSG LKDDKPVLEL VRRVTWGLFC AVYVGIMLFA LLVSAFMISG FVITYLAHEP LVIKESLNFD YTKSSPEAYV PISSCAGVAF
301: GLSGKESIET GKVKGLKDRT EITVSMTLPE SEYNRNLGMF QVRVDFLSAS GHVLASSRRP CMVKFSSEPI RLVQTLLKIA PLVTGYVSEI QTLNLKLKGL
401: VEKDIIPTAC LKIMIEQRAE FRPGAGIPEI YDASLFLESK LPFLKRIIWN WRKTLFVWIS MSLFIMELLF ALVFFRPLII PRTGQRTQQR DGTHSINNNL
501: YLDGQAGSR
Arabidopsis Description
SEI3Seipin-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8L615]
SUBAcon: [plasma membrane,nucleus,cytosol]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.