Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- plasma membrane 1
- mitochondrion 1
- nucleus 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g062230.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 92.01 | 93.83 |
| VIT_19s0014g00840.t01 | Wine grape | plasma membrane | 36.93 | 33.27 |
| Os09t0534000-01 | Rice | cytosol, nucleus, plasma membrane, plastid | 29.59 | 29.98 |
| GSMUA_Achr9P24190_001 | Banana | cytosol, peroxisome, plasma membrane | 32.83 | 29.86 |
| PGSC0003DMT400073048 | Potato | nucleus | 35.85 | 29.59 |
| EER99253 | Sorghum | plastid | 29.59 | 29.27 |
| Zm00001d021305_P001 | Maize | plastid | 28.51 | 28.57 |
| TraesCS5A01G322900.1 | Wheat | cytosol, nucleus, vacuole | 28.51 | 28.45 |
| HORVU5Hr1G082480.1 | Barley | mitochondrion | 28.29 | 28.36 |
| TraesCS5B01G323400.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 28.51 | 25.19 |
| PGSC0003DMT400018729 | Potato | golgi, peroxisome, plasma membrane | 18.79 | 20.71 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400018200 | EnsemblPlantsGene:PGSC0003DMG400007064 | EntrezGene:102582863 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0019915 | InterPro:Seipin | PANTHER:PTHR21212 | PANTHER:PTHR21212:SF3 | PFAM:PF06775 |
| PGSC:PGSC0003DMG400007064 | RefSeq:XP_006348398.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0002951B9E | UniProt:M1AA78 |
| MapMan:5.9.1 | : | : | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400007064]
Coordinates
chr7:+:52402825..52405324
Molecular Weight (calculated)
52647.0 Da
IEP (calculated)
10.149
GRAVY (calculated)
0.106
Length
463 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEQPIIVEN VVGIHDGGKF LEYDCKKSPN YVTNLVKYSL LLGAEKVLLG RKTQEAFSSS SLSSWTDEVT AREKRRSKGK SVLLDDKLAC GTSRNFGIES
101: SKEHFNSFDF TSFLAITMLK LFGFQMNILV KLFTFPIFLM NFWIMVLTLP LNTLTYAKNN FKKQLMNLGT KSWLKMMSFV FNQIKAQKSL LKLSVRFCWA
201: LFWAAYVCFL LVGLLVMGFV VSGLTMRRLM EEPIETTKAL NFDYTKTSPV AFAPLASNGL SSPLVSKPKI EDRPIPYNHK LQLTVSLTMP ESEYNMKLGI
301: FQVRVDCLSS NGKVTATSSY PSMLKFKSQP IRLVETAIKS IPLVTGFQSE VQNLKLVIND FTEGFEPTAC FKVVIEKRAE YQPEGAGIPE IYSATLHVET
401: ELPQIKKIIW IWRRTVFVWI GIFAFLSQLS FSLIFCRTLI LPGRRIMSVL GNKKNVQKNK ISW
101: SKEHFNSFDF TSFLAITMLK LFGFQMNILV KLFTFPIFLM NFWIMVLTLP LNTLTYAKNN FKKQLMNLGT KSWLKMMSFV FNQIKAQKSL LKLSVRFCWA
201: LFWAAYVCFL LVGLLVMGFV VSGLTMRRLM EEPIETTKAL NFDYTKTSPV AFAPLASNGL SSPLVSKPKI EDRPIPYNHK LQLTVSLTMP ESEYNMKLGI
301: FQVRVDCLSS NGKVTATSSY PSMLKFKSQP IRLVETAIKS IPLVTGFQSE VQNLKLVIND FTEGFEPTAC FKVVIEKRAE YQPEGAGIPE IYSATLHVET
401: ELPQIKKIIW IWRRTVFVWI GIFAFLSQLS FSLIFCRTLI LPGRRIMSVL GNKKNVQKNK ISW
001: MDSESESESN PSTTDEFDRF LDAPDEFYYD CLPIRSNSHQ PSSLLRRRKS AHRRDLISSD IETEPSSSSD GFDVGEKSSY VEKNAELRGD IDTSDVIEST
101: KDSIDLSSEK ENDLDVISSS GNDMDVIDSG RNRVDPFQEE STVTTVSSDD QGDDDYAGSV PQFREPPNST EWSLLGFLVG LVIKAIEFQV SFMTSLLTFP
201: PWLLRNCFLF FFDPFSTIRF GRRFLMARVA GISDMIFGYM NPFRLKDTKQ MLSIVCKFGW GMFWAVYVGI VLFGLLVSSL MIGGYVINRI ADKPFEVKET
301: LNFDYTKNSP EAYVPISSCA GVECEGSCKE SNEMSKIRGL RVIPRDQKLD IILSMTLPES AYNKNLGMFQ VRVDFLSVDG QTIASIRRPC MLRFRSEPIR
401: LVQTFFKVVP LVTGYVSEIQ TLSLKLKGFV EKDIPTACLK IIIEQRAEFR PGAGIPELYD ASLSVESGLP FFRKIIWKWR KTLFVWISMS LFITELLFTL
501: VCCRPLIIPR TQPRDRSPSN PTGVWR
101: KDSIDLSSEK ENDLDVISSS GNDMDVIDSG RNRVDPFQEE STVTTVSSDD QGDDDYAGSV PQFREPPNST EWSLLGFLVG LVIKAIEFQV SFMTSLLTFP
201: PWLLRNCFLF FFDPFSTIRF GRRFLMARVA GISDMIFGYM NPFRLKDTKQ MLSIVCKFGW GMFWAVYVGI VLFGLLVSSL MIGGYVINRI ADKPFEVKET
301: LNFDYTKNSP EAYVPISSCA GVECEGSCKE SNEMSKIRGL RVIPRDQKLD IILSMTLPES AYNKNLGMFQ VRVDFLSVDG QTIASIRRPC MLRFRSEPIR
401: LVQTFFKVVP LVTGYVSEIQ TLSLKLKGFV EKDIPTACLK IIIEQRAEFR PGAGIPELYD ASLSVESGLP FFRKIIWKWR KTLFVWISMS LFITELLFTL
501: VCCRPLIIPR TQPRDRSPSN PTGVWR
Arabidopsis Description
SEI2Seipin-2 [Source:UniProtKB/Swiss-Prot;Acc:F4I340]
SUBAcon: [plasma membrane,nucleus,cytosol]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.