Factsheet for GSMUA_Achr9P24190_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plastid 1
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032334.1-P	Field mustard	mitochondrion	18.86	50.0
Bra010814.1-P	Field mustard	plasma membrane	25.34	47.78
VIT_10s0003g01840.t01	Wine grape	plasma membrane	26.92	46.28
Os09t0534000-01	Rice	cytosol, nucleus, plasma membrane, plastid	38.11	42.45
CDY43679	Canola	plasma membrane	28.88	42.24
Zm00001d021305_P001	Maize	plastid	37.92	41.77
EER99253	Sorghum	plastid	37.72	41.03
CDY66765	Canola	cytosol, peroxisome, plasma membrane	28.88	40.16
TraesCS5A01G322900.1	Wheat	cytosol, nucleus, vacuole	35.36	38.79
HORVU5Hr1G082480.1	Barley	mitochondrion	34.77	38.31
Bra021906.1-P	Field mustard	cytosol, peroxisome, plasma membrane	29.67	36.21
TraesCS5B01G323400.1	Wheat	cytosol, nucleus, plasma membrane, plastid	36.15	35.11
KRH11077	Soybean	cytosol, nucleus, peroxisome	33.79	33.99
CDX99851	Canola	mitochondrion	27.31	33.57
Solyc07g062230.2.1	Tomato	cytosol, peroxisome, plasma membrane	29.86	33.48
CDY35278	Canola	cytosol, nucleus, plasma membrane	32.61	33.4
PGSC0003DMT400018200	Potato	cytosol, nucleus, peroxisome	29.86	32.83
AT1G29760.1	Thale cress	cytosol, nucleus, plasma membrane	33.01	31.94
CDX90209	Canola	cytosol, nucleus, plasma membrane	31.83	31.83
VIT_19s0014g00840.t01	Wine grape	plasma membrane	31.63	31.32
AT2G34380.1	Thale cress	cytosol, nucleus, plasma membrane	30.65	30.65
Solyc02g071900.2.1	Tomato	cytosol	33.6	30.48
KRH59037	Soybean	cytosol, nucleus, plasma membrane, plastid	30.84	30.13
PGSC0003DMT400073048	Potato	nucleus	33.2	30.12
GSMUA_Achr3P02430_001	Banana	cytosol, peroxisome, vacuole	20.43	24.82

Protein Annotations

EnsemblPlants:GSMUA_Achr9P24190_001	EnsemblPlants:GSMUA_Achr9T24190_001	EnsemblPlantsGene:GSMUA_Achr9G24190_001	GO:GO:0005575	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0019915	InterPro:Seipin	PANTHER:PTHR21212	PANTHER:PTHR21212:SF1	PFAM:PF06775
SEG:seg	TMHMM:TMhelix	UniParc:UPI000295170B	UniProt:M0U326	MapMan:5.9.1	:

Description

Putative uncharacterized protein Sb02g031000 [Source:GMGC_GENE;Acc:GSMUA_Achr9G24190_001]

Coordinates

chr9:+:29002290..29005279

Molecular Weight (calculated)

57186.2 Da

IEP (calculated)

6.384

GRAVY (calculated)

-0.026

Length

509 amino acids

Sequence
(BLAST)

001: MDLREIHHDD DKDDEDKVEA DSASDIYFDA LDSFIESDDD GEIFFDLPPS LQLESASTPL DVLPSSASTL RRRRQPPPEG TDPAPKANLD SPADTQPKIE
101: LDMKRRVLGS DTPASSAITS DQVSAGGRDG RPGVSRESGA TSRARDNEVA AADAGSVPSW CILEFSADLV IKAVFFQMTL LVSFVKTTFW LFHCSFLCVT
201: DPLGTLYRAR DGAKARVSEA CKSLYENILP LMFGRLIRQR ETWKLVVMLT WGFFWSLYVC LLLFGILAAS FLGASLIMRR VVEEPIQMTE ELSFDYTKTS
301: PEALVPIVPC VGCLVSSKEF SIVTHEFRRL APPNQKLQLT ISLTLPESDY NRNLGVFQVR VELLTINGNI TSSSRQPCIL RFKSSHIRFV ETFLKSMFLL
401: AGYSSETQVL SLRMRGLIEG TKPTICVRVT LEQRAEFRPG AGIPEIYSAS MKLEVELPFF KRMIWNWRKT VFIWTSMMLF IMQLLILLVC CRPVIFPRGR
501: SNGGTPRRP

Best Arabidopsis Sequence Match ( AT1G29760.1 )
(BLAST)

001: MDSESESESN PSTTDEFDRF LDAPDEFYYD CLPIRSNSHQ PSSLLRRRKS AHRRDLISSD IETEPSSSSD GFDVGEKSSY VEKNAELRGD IDTSDVIEST
101: KDSIDLSSEK ENDLDVISSS GNDMDVIDSG RNRVDPFQEE STVTTVSSDD QGDDDYAGSV PQFREPPNST EWSLLGFLVG LVIKAIEFQV SFMTSLLTFP
201: PWLLRNCFLF FFDPFSTIRF GRRFLMARVA GISDMIFGYM NPFRLKDTKQ MLSIVCKFGW GMFWAVYVGI VLFGLLVSSL MIGGYVINRI ADKPFEVKET
301: LNFDYTKNSP EAYVPISSCA GVECEGSCKE SNEMSKIRGL RVIPRDQKLD IILSMTLPES AYNKNLGMFQ VRVDFLSVDG QTIASIRRPC MLRFRSEPIR
401: LVQTFFKVVP LVTGYVSEIQ TLSLKLKGFV EKDIPTACLK IIIEQRAEFR PGAGIPELYD ASLSVESGLP FFRKIIWKWR KTLFVWISMS LFITELLFTL
501: VCCRPLIIPR TQPRDRSPSN PTGVWR

Arabidopsis Description

SEI2Seipin-2 [Source:UniProtKB/Swiss-Prot;Acc:F4I340]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.