Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY43679 | Canola | plasma membrane | 45.38 | 66.38 |
| CDY66765 | Canola | cytosol, peroxisome, plasma membrane | 47.35 | 65.85 |
| Bra021906.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 49.12 | 59.95 |
| VIT_10s0003g01840.t01 | Wine grape | plasma membrane | 30.06 | 51.69 |
| AT1G29760.1 | Thale cress | cytosol, nucleus, plasma membrane | 48.53 | 46.96 |
| KRH11077 | Soybean | cytosol, nucleus, peroxisome | 36.54 | 36.76 |
| Os09t0534000-01 | Rice | cytosol, nucleus, plasma membrane, plastid | 31.24 | 34.79 |
| KRH59037 | Soybean | cytosol, nucleus, plasma membrane, plastid | 34.58 | 33.78 |
| Solyc02g071900.2.1 | Tomato | cytosol | 37.13 | 33.69 |
| PGSC0003DMT400073048 | Potato | nucleus | 37.13 | 33.69 |
| EER99253 | Sorghum | plastid | 29.67 | 32.27 |
| Zm00001d021305_P001 | Maize | plastid | 28.88 | 31.82 |
| HORVU5Hr1G082480.1 | Barley | mitochondrion | 28.88 | 31.82 |
| GSMUA_Achr9P24190_001 | Banana | cytosol, peroxisome, plasma membrane | 30.65 | 30.65 |
| TraesCS5A01G322900.1 | Wheat | cytosol, nucleus, vacuole | 27.7 | 30.39 |
| TraesCS5B01G323400.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 28.49 | 27.67 |
| AT5G16460.1 | Thale cress | plasma membrane | 16.31 | 22.55 |
Protein Annotations
| MapMan:5.9.1 | EntrezGene:818001 | UniProt:A0A178VY05 | ProteinID:AAC26703.1 | ProteinID:AAM14953.1 | ProteinID:AEC08966.1 |
| ArrayExpress:AT2G34380 | EnsemblPlantsGene:AT2G34380 | RefSeq:AT2G34380 | TAIR:AT2G34380 | RefSeq:AT2G34380-TAIR-G | EnsemblPlants:AT2G34380.1 |
| TAIR:AT2G34380.1 | EMBL:AY099671 | Unigene:At.68174 | EMBL:BT000262 | GO:GO:0000003 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0006629 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009791 | GO:GO:0009846 | GO:GO:0009856 |
| GO:GO:0009987 | GO:GO:0010162 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0019915 |
| GO:GO:0034389 | GO:GO:0080155 | GO:GO:0140042 | RefSeq:NP_850230.1 | ProteinID:OAP09933.1 | PFAM:PF06775 |
| PO:PO:0000293 | PANTHER:PTHR21212 | PANTHER:PTHR21212:SF1 | UniProt:Q8L615 | InterPro:Seipin | TMHMM:TMhelix |
| UniParc:UPI00000ABF92 | SEG:seg | : | : | : | : |
Description
SEI3Seipin-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8L615]
Coordinates
chr2:+:14512707..14514516
Molecular Weight (calculated)
57418.6 Da
IEP (calculated)
4.739
GRAVY (calculated)
-0.091
Length
509 amino acids
Sequence
(BLAST)
(BLAST)
001: MESESESSST HSSCDRFLDA EDEFFYDSFS NHYDCLNSSP PANLRRRRLP MDTDSSSSSS TSSLESCEKR STVGENDELE VSLVDFETIE IDVDVTDSAN
101: SSIDSISEKG EDFEVIDSCT DTEKNMGEND SGRVDPFTVT TLNDERGEIY TGPEYTSTDW SLTSLVIRSI EFQVSLMITF IRFPPWLISK CLSFVFDPYR
201: TMRRGRRYLV SWIVGLCDSG LKDDKPVLEL VRRVTWGLFC AVYVGIMLFA LLVSAFMISG FVITYLAHEP LVIKESLNFD YTKSSPEAYV PISSCAGVAF
301: GLSGKESIET GKVKGLKDRT EITVSMTLPE SEYNRNLGMF QVRVDFLSAS GHVLASSRRP CMVKFSSEPI RLVQTLLKIA PLVTGYVSEI QTLNLKLKGL
401: VEKDIIPTAC LKIMIEQRAE FRPGAGIPEI YDASLFLESK LPFLKRIIWN WRKTLFVWIS MSLFIMELLF ALVFFRPLII PRTGQRTQQR DGTHSINNNL
501: YLDGQAGSR
101: SSIDSISEKG EDFEVIDSCT DTEKNMGEND SGRVDPFTVT TLNDERGEIY TGPEYTSTDW SLTSLVIRSI EFQVSLMITF IRFPPWLISK CLSFVFDPYR
201: TMRRGRRYLV SWIVGLCDSG LKDDKPVLEL VRRVTWGLFC AVYVGIMLFA LLVSAFMISG FVITYLAHEP LVIKESLNFD YTKSSPEAYV PISSCAGVAF
301: GLSGKESIET GKVKGLKDRT EITVSMTLPE SEYNRNLGMF QVRVDFLSAS GHVLASSRRP CMVKFSSEPI RLVQTLLKIA PLVTGYVSEI QTLNLKLKGL
401: VEKDIIPTAC LKIMIEQRAE FRPGAGIPEI YDASLFLESK LPFLKRIIWN WRKTLFVWIS MSLFIMELLF ALVFFRPLII PRTGQRTQQR DGTHSINNNL
501: YLDGQAGSR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.