Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400073048 | Potato | nucleus | 92.51 | 92.51 |
| Bra032334.1-P | Field mustard | mitochondrion | 20.14 | 58.85 |
| VIT_10s0003g01840.t01 | Wine grape | plasma membrane | 30.84 | 58.45 |
| Bra010814.1-P | Field mustard | plasma membrane | 25.31 | 52.59 |
| CDY43679 | Canola | plasma membrane | 29.77 | 47.99 |
| CDY66765 | Canola | cytosol, peroxisome, plasma membrane | 29.41 | 45.08 |
| Bra021906.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 31.02 | 41.73 |
| CDX99851 | Canola | mitochondrion | 29.59 | 40.1 |
| KRH11077 | Soybean | cytosol, nucleus, peroxisome | 35.47 | 39.33 |
| KRH59037 | Soybean | cytosol, nucleus, plasma membrane, plastid | 35.29 | 38.0 |
| CDY35278 | Canola | cytosol, nucleus, plasma membrane | 33.16 | 37.42 |
| AT2G34380.1 | Thale cress | cytosol, nucleus, plasma membrane | 33.69 | 37.13 |
| AT1G29760.1 | Thale cress | cytosol, nucleus, plasma membrane | 34.22 | 36.5 |
| EER99253 | Sorghum | plastid | 29.77 | 35.68 |
| Os09t0534000-01 | Rice | cytosol, nucleus, plasma membrane, plastid | 29.06 | 35.67 |
| CDX90209 | Canola | cytosol, nucleus, plasma membrane | 31.91 | 35.17 |
| Solyc07g062230.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 27.81 | 34.36 |
| TraesCS5A01G322900.1 | Wheat | cytosol, nucleus, vacuole | 27.81 | 33.62 |
| GSMUA_Achr9P24190_001 | Banana | cytosol, peroxisome, plasma membrane | 30.48 | 33.6 |
| Zm00001d021305_P001 | Maize | plastid | 27.63 | 33.55 |
| HORVU5Hr1G082480.1 | Barley | mitochondrion | 27.27 | 33.12 |
| TraesCS5B01G323400.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 28.88 | 30.92 |
| Solyc04g056380.2.1 | Tomato | golgi, nucleus, plasma membrane | 16.93 | 23.06 |
Protein Annotations
| EnsemblPlants:Solyc02g071900.2.1 | EnsemblPlantsGene:Solyc02g071900.2 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0019915 | InterPro:Seipin | PANTHER:PTHR21212 | PANTHER:PTHR21212:SF1 | PFAM:PF06775 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI00027691E0 | UniProt:K4B8G5 | MapMan:5.9.1 | : | : |
Description
No Description!
Coordinates
chr2:+:41273808..41276631
Molecular Weight (calculated)
63651.3 Da
IEP (calculated)
5.743
GRAVY (calculated)
-0.157
Length
561 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDTKPKKQA NNGDLFDDAA DEFPFDDCSD IFSDAETGGS EDDVNLNQSV ENDNLPLSSL RHRRPFSFND SGNESTNFRP FISSESYSNS RERKINFSRK
101: FMAEDKDKNG SLDNIESSNS MQLDLSTKSQ KGIGDEQNKE IPTGMNANSV IIDNSNEDSS LLKEDSVITH VNNDETDNSE EVNSHFREID DSSSNILFDL
201: ANLVIKSVGY QVNMLITIVS LMIKLFTFPV WIIYCSYMFV MDPFQIMRRV KRYVLHRFMR SFGFVFENTL KFVSRWLKEQ SSVWRLGLQL GWGCLWSVYV
301: CFVLVGLLVS AFIMGGILIR IMVEEPIRMN EPLNFDYTAK SPVAYVPIIR SPGVTCGVDS QVEVGMVDGV RVIPPNHKLQ VTVSLMLPES DYNRNLGIFQ
401: VRVDFLTSNG KVLSSARRPC MLQFKSNPIR LFSTFLKAAP LVTGYTSESQ KLKVDLKGFT EGFIPTACLR VIIEQRAEFH PGGGVPEIYT ASLTLESELP
501: FIKRMLWYWK TTLFVWVSMT LFTMEFLFAL LCCKPLIIPS LRLRHHSNSR TGSPNNAPIG R
101: FMAEDKDKNG SLDNIESSNS MQLDLSTKSQ KGIGDEQNKE IPTGMNANSV IIDNSNEDSS LLKEDSVITH VNNDETDNSE EVNSHFREID DSSSNILFDL
201: ANLVIKSVGY QVNMLITIVS LMIKLFTFPV WIIYCSYMFV MDPFQIMRRV KRYVLHRFMR SFGFVFENTL KFVSRWLKEQ SSVWRLGLQL GWGCLWSVYV
301: CFVLVGLLVS AFIMGGILIR IMVEEPIRMN EPLNFDYTAK SPVAYVPIIR SPGVTCGVDS QVEVGMVDGV RVIPPNHKLQ VTVSLMLPES DYNRNLGIFQ
401: VRVDFLTSNG KVLSSARRPC MLQFKSNPIR LFSTFLKAAP LVTGYTSESQ KLKVDLKGFT EGFIPTACLR VIIEQRAEFH PGGGVPEIYT ASLTLESELP
501: FIKRMLWYWK TTLFVWVSMT LFTMEFLFAL LCCKPLIIPS LRLRHHSNSR TGSPNNAPIG R
001: MDSESESESN PSTTDEFDRF LDAPDEFYYD CLPIRSNSHQ PSSLLRRRKS AHRRDLISSD IETEPSSSSD GFDVGEKSSY VEKNAELRGD IDTSDVIEST
101: KDSIDLSSEK ENDLDVISSS GNDMDVIDSG RNRVDPFQEE STVTTVSSDD QGDDDYAGSV PQFREPPNST EWSLLGFLVG LVIKAIEFQV SFMTSLLTFP
201: PWLLRNCFLF FFDPFSTIRF GRRFLMARVA GISDMIFGYM NPFRLKDTKQ MLSIVCKFGW GMFWAVYVGI VLFGLLVSSL MIGGYVINRI ADKPFEVKET
301: LNFDYTKNSP EAYVPISSCA GVECEGSCKE SNEMSKIRGL RVIPRDQKLD IILSMTLPES AYNKNLGMFQ VRVDFLSVDG QTIASIRRPC MLRFRSEPIR
401: LVQTFFKVVP LVTGYVSEIQ TLSLKLKGFV EKDIPTACLK IIIEQRAEFR PGAGIPELYD ASLSVESGLP FFRKIIWKWR KTLFVWISMS LFITELLFTL
501: VCCRPLIIPR TQPRDRSPSN PTGVWR
101: KDSIDLSSEK ENDLDVISSS GNDMDVIDSG RNRVDPFQEE STVTTVSSDD QGDDDYAGSV PQFREPPNST EWSLLGFLVG LVIKAIEFQV SFMTSLLTFP
201: PWLLRNCFLF FFDPFSTIRF GRRFLMARVA GISDMIFGYM NPFRLKDTKQ MLSIVCKFGW GMFWAVYVGI VLFGLLVSSL MIGGYVINRI ADKPFEVKET
301: LNFDYTKNSP EAYVPISSCA GVECEGSCKE SNEMSKIRGL RVIPRDQKLD IILSMTLPES AYNKNLGMFQ VRVDFLSVDG QTIASIRRPC MLRFRSEPIR
401: LVQTFFKVVP LVTGYVSEIQ TLSLKLKGFV EKDIPTACLK IIIEQRAEFR PGAGIPELYD ASLSVESGLP FFRKIIWKWR KTLFVWISMS LFITELLFTL
501: VCCRPLIIPR TQPRDRSPSN PTGVWR
Arabidopsis Description
SEI2Seipin-2 [Source:UniProtKB/Swiss-Prot;Acc:F4I340]
SUBAcon: [plasma membrane,nucleus,cytosol]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.