CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0003g01840.t01	Wine grape	plasma membrane	33.0	56.42
Bra032334.1-P	Field mustard	mitochondrion	20.95	55.21
Bra010814.1-P	Field mustard	plasma membrane	28.26	52.96
KRH59037	Soybean	cytosol, nucleus, plasma membrane, plastid	51.98	50.48
CDY43679	Canola	plasma membrane	30.24	43.97
CDY66765	Canola	cytosol, peroxisome, plasma membrane	31.03	42.9
CDX99851	Canola	mitochondrion	32.41	39.61
Bra021906.1-P	Field mustard	cytosol, peroxisome, plasma membrane	32.41	39.33
AT1G29760.1	Thale cress	cytosol, nucleus, plasma membrane	38.34	36.88
CDY35278	Canola	cytosol, nucleus, plasma membrane	36.17	36.82
AT2G34380.1	Thale cress	cytosol, nucleus, plasma membrane	36.76	36.54
Os09t0534000-01	Rice	cytosol, nucleus, plasma membrane, plastid	32.81	36.32
Solyc02g071900.2.1	Tomato	cytosol	39.33	35.47
PGSC0003DMT400073048	Potato	nucleus	39.13	35.29
EER99253	Sorghum	plastid	32.21	34.83
CDX90209	Canola	cytosol, nucleus, plasma membrane	34.78	34.58
GSMUA_Achr9P24190_001	Banana	cytosol, peroxisome, plasma membrane	33.99	33.79
Zm00001d021305_P001	Maize	plastid	30.83	33.77
TraesCS5A01G322900.1	Wheat	cytosol, nucleus, vacuole	28.85	31.47
HORVU5Hr1G082480.1	Barley	mitochondrion	28.66	31.39
TraesCS5B01G323400.1	Wheat	cytosol, nucleus, plasma membrane, plastid	30.04	29.01
KRH40303	Soybean	endoplasmic reticulum	19.37	24.08
KRH00920	Soybean	endoplasmic reticulum	20.36	23.15

Protein Annotations

EMBL:ACUP02009178	EnsemblPlants:KRH11077	EnsemblPlantsGene:GLYMA_15G087400	EntrezGene:100796452	GO:GO:0005575	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0019915	InterPro:Seipin	PANTHER:PTHR21212	PANTHER:PTHR21212:SF1
PFAM:PF06775	ProteinID:KRH11077	ProteinID:KRH11077.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI000233BB9E
UniProt:I1MEW8	MapMan:5.9.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:6730326..6733138

Molecular Weight (calculated)

56869.7 Da

IEP (calculated)

8.005

GRAVY (calculated)

-0.079

Length

506 amino acids

Sequence
(BLAST)

001: MDPPSSVDQD DDVFLDAFHQ CPAEGSTEPS DSASTLLDHK PHSPPTTIRR RPLRRGIPGT QSSDSSIVSD LIDVDSRRSF RHKSRLRNLN KNENSEEKPD
101: SEEPRQVNAS PEENNEGSTV TSAANDDAAG DSIDSAPRLG DSSSSLLELA AGLVINLLGF QMKLIFMFIT SPFLFMFYSC MFFMDPLGTT RKGKDFVIGI
201: LNRMRCFAFS CIRPYVNRWV KENDSFWSVA FRWGWGFMWS MYVCCVLFGL LVSSFVFSGF VMKCLVEKPI QMREVLNFDY TKLSPVAYVP VMSCAGVVGG
301: RSSENKVDAR KWAGERVIPS KHKVQVTVEL RVPESGYNRN LGIFQTRVDF LLSNGKAIAS SSQPCMLRFR SEPIRLITTF LKIAPLLTGY ISETQTLNVK
401: MRGFVEGDVP TSCLKVTLEQ RAEYQPGAGI PEIYDASLII ESELPLFKRM IWLWKMSIFI WIAMMAFFAE LLFALVCCTP IIIPKTRQRV ASGRSPATLN
501: HLQAQH

Best Arabidopsis Sequence Match ( AT1G29760.1 )
(BLAST)

001: MDSESESESN PSTTDEFDRF LDAPDEFYYD CLPIRSNSHQ PSSLLRRRKS AHRRDLISSD IETEPSSSSD GFDVGEKSSY VEKNAELRGD IDTSDVIEST
101: KDSIDLSSEK ENDLDVISSS GNDMDVIDSG RNRVDPFQEE STVTTVSSDD QGDDDYAGSV PQFREPPNST EWSLLGFLVG LVIKAIEFQV SFMTSLLTFP
201: PWLLRNCFLF FFDPFSTIRF GRRFLMARVA GISDMIFGYM NPFRLKDTKQ MLSIVCKFGW GMFWAVYVGI VLFGLLVSSL MIGGYVINRI ADKPFEVKET
301: LNFDYTKNSP EAYVPISSCA GVECEGSCKE SNEMSKIRGL RVIPRDQKLD IILSMTLPES AYNKNLGMFQ VRVDFLSVDG QTIASIRRPC MLRFRSEPIR
401: LVQTFFKVVP LVTGYVSEIQ TLSLKLKGFV EKDIPTACLK IIIEQRAEFR PGAGIPELYD ASLSVESGLP FFRKIIWKWR KTLFVWISMS LFITELLFTL
501: VCCRPLIIPR TQPRDRSPSN PTGVWR

Arabidopsis Description

SEI2Seipin-2 [Source:UniProtKB/Swiss-Prot;Acc:F4I340]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.