Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032334.1-P | Field mustard | mitochondrion | 28.71 | 78.65 |
| Bra010814.1-P | Field mustard | plasma membrane | 39.54 | 77.04 |
| CDY35278 | Canola | cytosol, nucleus, plasma membrane | 55.51 | 58.75 |
| CDX90209 | Canola | cytosol, nucleus, plasma membrane | 55.13 | 56.97 |
| CDX99851 | Canola | mitochondrion | 42.21 | 53.62 |
| VIT_10s0003g01840.t01 | Wine grape | plasma membrane | 29.28 | 52.03 |
| AT2G34380.1 | Thale cress | cytosol, nucleus, plasma membrane | 46.96 | 48.53 |
| KRH11077 | Soybean | cytosol, nucleus, peroxisome | 36.88 | 38.34 |
| PGSC0003DMT400073048 | Potato | nucleus | 36.88 | 34.58 |
| KRH59037 | Soybean | cytosol, nucleus, plasma membrane, plastid | 34.22 | 34.55 |
| Os09t0534000-01 | Rice | cytosol, nucleus, plasma membrane, plastid | 29.85 | 34.35 |
| Solyc02g071900.2.1 | Tomato | cytosol | 36.5 | 34.22 |
| Zm00001d021305_P001 | Maize | plastid | 30.04 | 34.2 |
| EER99253 | Sorghum | plastid | 30.23 | 33.97 |
| GSMUA_Achr9P24190_001 | Banana | cytosol, peroxisome, plasma membrane | 31.94 | 33.01 |
| HORVU5Hr1G082480.1 | Barley | mitochondrion | 26.43 | 30.09 |
| TraesCS5A01G322900.1 | Wheat | cytosol, nucleus, vacuole | 24.9 | 28.23 |
| TraesCS5B01G323400.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 27.19 | 27.29 |
| AT5G16460.1 | Thale cress | plasma membrane | 16.54 | 23.64 |
Protein Annotations
| MapMan:5.9.1 | EntrezGene:839854 | ProteinID:AAG10618.1 | ProteinID:AEE31126.1 | ArrayExpress:AT1G29760 | EnsemblPlantsGene:AT1G29760 |
| RefSeq:AT1G29760 | TAIR:AT1G29760 | RefSeq:AT1G29760-TAIR-G | EnsemblPlants:AT1G29760.1 | TAIR:AT1G29760.1 | UniProt:F4I340 |
| GO:GO:0000003 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 |
| GO:GO:0005789 | GO:GO:0006629 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009791 |
| GO:GO:0009846 | GO:GO:0009856 | GO:GO:0009987 | GO:GO:0010162 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016043 | GO:GO:0019915 | GO:GO:0034389 | GO:GO:0080155 | GO:GO:0140042 | RefSeq:NP_174269.1 |
| PFAM:PF06775 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR21212 |
| PANTHER:PTHR21212:SF1 | InterPro:Seipin | TMHMM:TMhelix | UniParc:UPI0000162F1A | SEG:seg | : |
Description
SEI2Seipin-2 [Source:UniProtKB/Swiss-Prot;Acc:F4I340]
Coordinates
chr1:+:10422292..10424513
Molecular Weight (calculated)
59680.4 Da
IEP (calculated)
4.796
GRAVY (calculated)
-0.153
Length
526 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSESESESN PSTTDEFDRF LDAPDEFYYD CLPIRSNSHQ PSSLLRRRKS AHRRDLISSD IETEPSSSSD GFDVGEKSSY VEKNAELRGD IDTSDVIEST
101: KDSIDLSSEK ENDLDVISSS GNDMDVIDSG RNRVDPFQEE STVTTVSSDD QGDDDYAGSV PQFREPPNST EWSLLGFLVG LVIKAIEFQV SFMTSLLTFP
201: PWLLRNCFLF FFDPFSTIRF GRRFLMARVA GISDMIFGYM NPFRLKDTKQ MLSIVCKFGW GMFWAVYVGI VLFGLLVSSL MIGGYVINRI ADKPFEVKET
301: LNFDYTKNSP EAYVPISSCA GVECEGSCKE SNEMSKIRGL RVIPRDQKLD IILSMTLPES AYNKNLGMFQ VRVDFLSVDG QTIASIRRPC MLRFRSEPIR
401: LVQTFFKVVP LVTGYVSEIQ TLSLKLKGFV EKDIPTACLK IIIEQRAEFR PGAGIPELYD ASLSVESGLP FFRKIIWKWR KTLFVWISMS LFITELLFTL
501: VCCRPLIIPR TQPRDRSPSN PTGVWR
101: KDSIDLSSEK ENDLDVISSS GNDMDVIDSG RNRVDPFQEE STVTTVSSDD QGDDDYAGSV PQFREPPNST EWSLLGFLVG LVIKAIEFQV SFMTSLLTFP
201: PWLLRNCFLF FFDPFSTIRF GRRFLMARVA GISDMIFGYM NPFRLKDTKQ MLSIVCKFGW GMFWAVYVGI VLFGLLVSSL MIGGYVINRI ADKPFEVKET
301: LNFDYTKNSP EAYVPISSCA GVECEGSCKE SNEMSKIRGL RVIPRDQKLD IILSMTLPES AYNKNLGMFQ VRVDFLSVDG QTIASIRRPC MLRFRSEPIR
401: LVQTFFKVVP LVTGYVSEIQ TLSLKLKGFV EKDIPTACLK IIIEQRAEFR PGAGIPELYD ASLSVESGLP FFRKIIWKWR KTLFVWISMS LFITELLFTL
501: VCCRPLIIPR TQPRDRSPSN PTGVWR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.