CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0003g01840.t01	Wine grape	plasma membrane	30.9	54.39
Bra032334.1-P	Field mustard	mitochondrion	19.58	53.12
Bra010814.1-P	Field mustard	plasma membrane	27.45	52.96
KRH11077	Soybean	cytosol, nucleus, peroxisome	50.48	51.98
CDY43679	Canola	plasma membrane	27.45	41.09
CDY66765	Canola	cytosol, peroxisome, plasma membrane	28.02	39.89
CDY35278	Canola	cytosol, nucleus, plasma membrane	37.62	39.44
CDX99851	Canola	mitochondrion	30.9	38.89
CDX90209	Canola	cytosol, nucleus, plasma membrane	35.7	36.54
Bra021906.1-P	Field mustard	cytosol, peroxisome, plasma membrane	29.17	36.45
PGSC0003DMT400073048	Potato	nucleus	38.58	35.83
Solyc02g071900.2.1	Tomato	cytosol	38.0	35.29
AT2G34380.1	Thale cress	cytosol, nucleus, plasma membrane	33.78	34.58
AT1G29760.1	Thale cress	cytosol, nucleus, plasma membrane	34.55	34.22
EER99253	Sorghum	plastid	30.71	34.19
Zm00001d021305_P001	Maize	plastid	29.75	33.55
Os09t0534000-01	Rice	cytosol, nucleus, plasma membrane, plastid	29.17	33.26
HORVU5Hr1G082480.1	Barley	mitochondrion	27.64	31.17
TraesCS5A01G322900.1	Wheat	cytosol, nucleus, vacuole	27.64	31.03
GSMUA_Achr9P24190_001	Banana	cytosol, peroxisome, plasma membrane	30.13	30.84
TraesCS5B01G323400.1	Wheat	cytosol, nucleus, plasma membrane, plastid	28.98	28.82
KRH40303	Soybean	endoplasmic reticulum	18.23	23.34
KRH00920	Soybean	endoplasmic reticulum	18.81	22.02

Protein Annotations

EMBL:ACUP02003299	EnsemblPlants:KRH59037	EnsemblPlantsGene:GLYMA_05G162700	EntrezGene:100813988	GO:GO:0005575	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0019915	InterPro:Seipin	PANTHER:PTHR21212	PANTHER:PTHR21212:SF1
PFAM:PF06775	ProteinID:KRH59037	ProteinID:KRH59037.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002339F56
UniProt:K7KQK3	MapMan:5.9.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:35379727..35382263

Molecular Weight (calculated)

57956.6 Da

IEP (calculated)

6.894

GRAVY (calculated)

-0.026

Length

521 amino acids

Sequence
(BLAST)

001: MESSFSGPNN QNDDVFLDAL PHCPFHHCSG AADKSPESSS SSSILSDPNP PSPPPATTIR RRSTRRNSPV RETTNTGSSH NSTTGNVTNL RSDRNLGTSN
101: GNENFPEKCD SNREKVRPFQ SPSVGTEEGN EESTLTTAEN EDGVTDSADS AVEFSNSPLN SLDYVTGLVI RSIVFQINIF VVLMKFPVWF MLHVFLFFVD
201: PFGTISKGKG LLVVILGKFW CFVFRCIDPS AQGWFKEHKS LWNVAFRCGW GFLRSMYICC ILFGLLVSSL VVSGFLVRWL VEEPFQMRQV LNFDYTKQSP
301: VAFVPVMSCD GVGGAHDSEK GIAVREWMGR RVIPANQKVQ VTVSLVVPES EYNTNLGIFQ IRVDFLSSDG KTIWSSNQPC MLKFTSEPIR LITTFLKIVP
401: LVTGYISETQ TLNVKMRGFV EGDVPTSCLK VTLEQRAEYS PGAGIPQMYD SSVVIESELP LFKRIIWHGK ICIFLWITMM AFMMELLLVL VCCLPIIIPR
501: TRQSSGAARV TGTQNNLQAP N

Best Arabidopsis Sequence Match ( AT1G29760.1 )
(BLAST)

001: MDSESESESN PSTTDEFDRF LDAPDEFYYD CLPIRSNSHQ PSSLLRRRKS AHRRDLISSD IETEPSSSSD GFDVGEKSSY VEKNAELRGD IDTSDVIEST
101: KDSIDLSSEK ENDLDVISSS GNDMDVIDSG RNRVDPFQEE STVTTVSSDD QGDDDYAGSV PQFREPPNST EWSLLGFLVG LVIKAIEFQV SFMTSLLTFP
201: PWLLRNCFLF FFDPFSTIRF GRRFLMARVA GISDMIFGYM NPFRLKDTKQ MLSIVCKFGW GMFWAVYVGI VLFGLLVSSL MIGGYVINRI ADKPFEVKET
301: LNFDYTKNSP EAYVPISSCA GVECEGSCKE SNEMSKIRGL RVIPRDQKLD IILSMTLPES AYNKNLGMFQ VRVDFLSVDG QTIASIRRPC MLRFRSEPIR
401: LVQTFFKVVP LVTGYVSEIQ TLSLKLKGFV EKDIPTACLK IIIEQRAEFR PGAGIPELYD ASLSVESGLP FFRKIIWKWR KTLFVWISMS LFITELLFTL
501: VCCRPLIIPR TQPRDRSPSN PTGVWR

Arabidopsis Description

SEI2Seipin-2 [Source:UniProtKB/Swiss-Prot;Acc:F4I340]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.