CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 3
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021305_P001	Maize	plastid	81.62	82.68
Os09t0534000-01	Rice	cytosol, nucleus, plasma membrane, plastid	66.88	68.49
HORVU5Hr1G082480.1	Barley	mitochondrion	59.4	60.17
TraesCS5A01G322900.1	Wheat	cytosol, nucleus, vacuole	56.62	57.11
TraesCS5B01G323400.1	Wheat	cytosol, nucleus, plasma membrane, plastid	60.68	54.2
Bra032334.1-P	Field mustard	mitochondrion	18.38	44.79
VIT_10s0003g01840.t01	Wine grape	plasma membrane	26.28	41.55
CDY43679	Canola	plasma membrane	30.13	40.52
Bra010814.1-P	Field mustard	plasma membrane	23.29	40.37
CDY66765	Canola	cytosol, peroxisome, plasma membrane	30.34	38.8
GSMUA_Achr9P24190_001	Banana	cytosol, peroxisome, plasma membrane	41.03	37.72
Bra021906.1-P	Field mustard	cytosol, peroxisome, plasma membrane	31.84	35.73
CDX99851	Canola	mitochondrion	31.2	35.27
KRH11077	Soybean	cytosol, nucleus, peroxisome	34.83	32.21
CDY35278	Canola	cytosol, nucleus, plasma membrane	33.55	31.59
KRH59037	Soybean	cytosol, nucleus, plasma membrane, plastid	34.19	30.71
Solyc07g062230.2.1	Tomato	cytosol, peroxisome, plasma membrane	29.7	30.62
CDX90209	Canola	cytosol, nucleus, plasma membrane	33.12	30.45
VIT_19s0014g00840.t01	Wine grape	plasma membrane	33.33	30.35
AT1G29760.1	Thale cress	cytosol, nucleus, plasma membrane	33.97	30.23
PGSC0003DMT400073048	Potato	nucleus	35.68	29.77
Solyc02g071900.2.1	Tomato	cytosol	35.68	29.77
AT2G34380.1	Thale cress	cytosol, nucleus, plasma membrane	32.27	29.67
PGSC0003DMT400018200	Potato	cytosol, nucleus, peroxisome	29.27	29.59
OQU82879	Sorghum	plasma membrane	20.09	22.82

Protein Annotations

EnsemblPlants:EER99253	EnsemblPlantsGene:SORBI_3002G276700	EntrezGene:8066935	GO:GO:0005575	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0019915	InterPro:Seipin	PANTHER:PTHR21212	PANTHER:PTHR21212:SF1	PFAM:PF06775
ProteinID:EER99253	ProteinID:EER99253.1	RefSeq:XP_002462732.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0001A83D7C
UniProt:C5X692	MapMan:5.9.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:65950363..65952958

Molecular Weight (calculated)

50677.0 Da

IEP (calculated)

5.328

GRAVY (calculated)

0.065

Length

468 amino acids

Sequence
(BLAST)

001: MDADDPSAAT AASDDDTFFD ALDSLPSPSP SLSPSPSPPP SPSAPPLHTP SSSTLRRRPR RGKSLKQPDS VFSPSPSASA ATSTVTAVED EPLKPDSSEA
101: TSAAPRTVPA SEVEEEEQEE HNKATDADAD VEVEARAPTP TPTPTPTPAP SILEYLAVLV IKAVVFQVSA LISCLAFPVR LLQWWFLFMT DPLGLARRAR
201: AWALGVAGDA AGILTARLGG GEGVGKVAQR IVWGSLWAAY VCVVLCSLLI MAFVGGGLLV GKIVEEPVQV TETLNFDYTR PSPMALVPVP RLVPPNQRMQ
301: LEVSLTLPES DYNRRLGVFQ VKAEFLSADG KVMSTSSQPC MLKFKSVHMH FIETFLQSVS LLSGYSSESQ VIRLKMRGIT QGLEPTTAVR IILEQRAEFG
401: RGAGIPEIYA ASLKLEAELP LFKRLLWNWR WTLFVWSSMG FFVFELLFAL VCCRPCIFPR SGHNVAAP

Best Arabidopsis Sequence Match ( AT1G29760.1 )
(BLAST)

001: MDSESESESN PSTTDEFDRF LDAPDEFYYD CLPIRSNSHQ PSSLLRRRKS AHRRDLISSD IETEPSSSSD GFDVGEKSSY VEKNAELRGD IDTSDVIEST
101: KDSIDLSSEK ENDLDVISSS GNDMDVIDSG RNRVDPFQEE STVTTVSSDD QGDDDYAGSV PQFREPPNST EWSLLGFLVG LVIKAIEFQV SFMTSLLTFP
201: PWLLRNCFLF FFDPFSTIRF GRRFLMARVA GISDMIFGYM NPFRLKDTKQ MLSIVCKFGW GMFWAVYVGI VLFGLLVSSL MIGGYVINRI ADKPFEVKET
301: LNFDYTKNSP EAYVPISSCA GVECEGSCKE SNEMSKIRGL RVIPRDQKLD IILSMTLPES AYNKNLGMFQ VRVDFLSVDG QTIASIRRPC MLRFRSEPIR
401: LVQTFFKVVP LVTGYVSEIQ TLSLKLKGFV EKDIPTACLK IIIEQRAEFR PGAGIPELYD ASLSVESGLP FFRKIIWKWR KTLFVWISMS LFITELLFTL
501: VCCRPLIIPR TQPRDRSPSN PTGVWR

Arabidopsis Description

SEI2Seipin-2 [Source:UniProtKB/Swiss-Prot;Acc:F4I340]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.