Factsheet for Bra021906.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 2
plasma membrane 2
plastid 1
mitochondrion 1
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY66765	Canola	cytosol, peroxisome, plasma membrane	81.3	92.62
CDY43679	Canola	plasma membrane	77.22	92.53
Bra032334.1-P	Field mustard	mitochondrion	29.02	63.02
Bra010814.1-P	Field mustard	plasma membrane	36.21	55.93
VIT_10s0003g01840.t01	Wine grape	plasma membrane	35.01	49.32
AT2G34380.1	Thale cress	cytosol, nucleus, plasma membrane	59.95	49.12
Os09t0534000-01	Rice	cytosol, nucleus, plasma membrane, plastid	37.41	34.14
Bra006356.1-P	Field mustard	extracellular	21.82	33.46
KRH11077	Soybean	cytosol, nucleus, peroxisome	39.33	32.41
EER99253	Sorghum	plastid	35.73	31.84
Zm00001d021305_P001	Maize	plastid	35.01	31.6
PGSC0003DMT400073048	Potato	nucleus	41.97	31.19
Solyc02g071900.2.1	Tomato	cytosol	41.73	31.02
HORVU5Hr1G082480.1	Barley	mitochondrion	33.57	30.3
TraesCS5A01G322900.1	Wheat	cytosol, nucleus, vacuole	33.57	30.17
GSMUA_Achr9P24190_001	Banana	cytosol, peroxisome, plasma membrane	36.21	29.67
KRH59037	Soybean	cytosol, nucleus, plasma membrane, plastid	36.45	29.17
Bra023566.1-P	Field mustard	plasma membrane	23.98	28.09
TraesCS5B01G323400.1	Wheat	cytosol, nucleus, plasma membrane, plastid	34.53	27.48

Protein Annotations

MapMan:5.9.1	EnsemblPlantsGene:Bra021906	EnsemblPlants:Bra021906.1	EnsemblPlants:Bra021906.1-P	GO:GO:0000003	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0007275	GO:GO:0008150
GO:GO:0009791	GO:GO:0009846	GO:GO:0009856	GO:GO:0009987	GO:GO:0010162	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0019915	GO:GO:0034389	GO:GO:0080155	GO:GO:0140042
UniProt:M4DZF9	PFAM:PF06775	PANTHER:PTHR21212	PANTHER:PTHR21212:SF1	InterPro:Seipin	TMHMM:TMhelix
UniParc:UPI00025438C2	SEG:seg	:	:	:	:

Description

AT2G34380 (E=1e-077) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Adipose-regulatory protein, Seipin (InterPro:IPR009617); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29760.1); Has 168 Blast hits to 163 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 120; Fungi - 17; Plants - 29; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

Coordinates

chrA04:+:15150056..15151309

Molecular Weight (calculated)

46968.2 Da

IEP (calculated)

7.989

GRAVY (calculated)

0.043

Length

417 amino acids

Sequence
(BLAST)

001: MESEEPSSNS SCRCVVSNTM EEVDKLSSFI TAEKDVGVSD RVSPFLTGSN TMNGGKPENS KETTSTDHHQ GDDFLREATT TDRSLLSSLA TLVIKSIEFQ
101: VSLMLSFIKF PPWFIHICLS FVMDPYRTMR RGRRYLISKV VELCELGLND DKLVLETVRR LALGLLWAVH VGIVLFAMLV SAFMISGFVI SLLAREPLVV
201: KESLSFDYTK NSPEAYVPIT RVNSPNQRTE VSVSMTLPES EYNRNLGMFQ VRVEFLSENG EVLATSRRPC MLRFRTEPVR LVQTFLKIAP LVSGYVSETQ
301: TLKLKLKGFA EKDVVSTACV KVMVEQRAEF RGGAGVPEIY EASLLLESEL PLLKRIIWNW RRTLFVWISM CLFVTELVFA LVFVRCLIIP RMGQRRQQSD
401: GTHSINSTLN LDGSGGK

Best Arabidopsis Sequence Match ( AT2G34380.1 )
(BLAST)

001: MESESESSST HSSCDRFLDA EDEFFYDSFS NHYDCLNSSP PANLRRRRLP MDTDSSSSSS TSSLESCEKR STVGENDELE VSLVDFETIE IDVDVTDSAN
101: SSIDSISEKG EDFEVIDSCT DTEKNMGEND SGRVDPFTVT TLNDERGEIY TGPEYTSTDW SLTSLVIRSI EFQVSLMITF IRFPPWLISK CLSFVFDPYR
201: TMRRGRRYLV SWIVGLCDSG LKDDKPVLEL VRRVTWGLFC AVYVGIMLFA LLVSAFMISG FVITYLAHEP LVIKESLNFD YTKSSPEAYV PISSCAGVAF
301: GLSGKESIET GKVKGLKDRT EITVSMTLPE SEYNRNLGMF QVRVDFLSAS GHVLASSRRP CMVKFSSEPI RLVQTLLKIA PLVTGYVSEI QTLNLKLKGL
401: VEKDIIPTAC LKIMIEQRAE FRPGAGIPEI YDASLFLESK LPFLKRIIWN WRKTLFVWIS MSLFIMELLF ALVFFRPLII PRTGQRTQQR DGTHSINNNL
501: YLDGQAGSR

Arabidopsis Description

SEI3Seipin-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8L615]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.