Subcellular Localization
min:
: max
Winner_takes_all: vacuole, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- vacuole 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G082480.1 | Barley | mitochondrion | 66.16 | 66.45 |
| TraesCS5B01G323400.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 74.57 | 66.03 |
| Os09t0534000-01 | Rice | cytosol, nucleus, plasma membrane, plastid | 60.13 | 61.05 |
| EER99253 | Sorghum | plastid | 57.11 | 56.62 |
| Zm00001d021305_P001 | Maize | plastid | 56.25 | 56.49 |
| Bra032334.1-P | Field mustard | mitochondrion | 18.1 | 43.75 |
| VIT_10s0003g01840.t01 | Wine grape | plasma membrane | 25.22 | 39.53 |
| CDY43679 | Canola | plasma membrane | 29.53 | 39.37 |
| Bra010814.1-P | Field mustard | plasma membrane | 22.41 | 38.52 |
| CDY66765 | Canola | cytosol, peroxisome, plasma membrane | 29.53 | 37.43 |
| GSMUA_Achr9P24190_001 | Banana | cytosol, peroxisome, plasma membrane | 38.79 | 35.36 |
| Bra021906.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 30.17 | 33.57 |
| CDX99851 | Canola | mitochondrion | 28.02 | 31.4 |
| Solyc07g062230.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 28.66 | 29.3 |
| KRH11077 | Soybean | cytosol, nucleus, peroxisome | 31.47 | 28.85 |
| PGSC0003DMT400018200 | Potato | cytosol, nucleus, peroxisome | 28.45 | 28.51 |
| CDY35278 | Canola | cytosol, nucleus, plasma membrane | 30.39 | 28.37 |
| PGSC0003DMT400073048 | Potato | nucleus | 33.84 | 27.99 |
| Solyc02g071900.2.1 | Tomato | cytosol | 33.62 | 27.81 |
| AT2G34380.1 | Thale cress | cytosol, nucleus, plasma membrane | 30.39 | 27.7 |
| KRH59037 | Soybean | cytosol, nucleus, plasma membrane, plastid | 31.03 | 27.64 |
| VIT_19s0014g00840.t01 | Wine grape | plasma membrane | 30.39 | 27.43 |
| CDX90209 | Canola | cytosol, nucleus, plasma membrane | 28.45 | 25.93 |
| AT1G29760.1 | Thale cress | cytosol, nucleus, plasma membrane | 28.23 | 24.9 |
| TraesCS4A01G184000.1 | Wheat | plasma membrane | 19.4 | 21.74 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G322900.1 | EnsemblPlantsGene:TraesCS5A01G322900 | GO:GO:0008150 | GO:GO:0019915 | InterPro:Seipin | PANTHER:PTHR21212 |
| PANTHER:PTHR21212:SF1 | PFAM:PF06775 | SEG:seg | TMHMM:TMhelix | MapMan:5.9.1 | : |
Description
No Description!
Coordinates
chr5A:-:535215975..535219174
Molecular Weight (calculated)
50330.9 Da
IEP (calculated)
4.177
GRAVY (calculated)
0.004
Length
464 amino acids
Sequence
(BLAST)
(BLAST)
001: MDADDPAATP SAPPTSEADF FDVSDALPTP PGKAKPDSGS DSDSSEATSA PRSPPPLEEE VDQKDAEPAA PEANVDEKDS EPAAPEANVD EKDSEPPAPE
101: AEVDEKGAES AAPEAEVDEK DAESAVPEEE VDEKDAESEA AAPDYRPMAT APPAFLESFA VFVIKAVVFQ VSALVACLTF PFRLLQWWFL FVTDPLGSAQ
201: RARDWALGVA GQATGAVGAW LGAGDGVPRV VARLLWGALW AMYVCVLLCM MLAMAFTAGG VLVGKVVEEP VQVTENLNFD YTKPSPVAFV PVGRLVPPQQ
301: RMQLEVLLTL PESDYNRRLG VFQVRAELLS ADGKVVTASS QPCMLKFKSV HMHFIETFFQ SVSLLSGYSS ESQVIKLKMT GIKEAFKPIT GVRMVLEQRA
401: EFATGAGIPE IYDASIKLEA ELPLLKRVLW HWRWTMFVWS SMAVFVFELL LAVVCCRPCI FPRS
101: AEVDEKGAES AAPEAEVDEK DAESAVPEEE VDEKDAESEA AAPDYRPMAT APPAFLESFA VFVIKAVVFQ VSALVACLTF PFRLLQWWFL FVTDPLGSAQ
201: RARDWALGVA GQATGAVGAW LGAGDGVPRV VARLLWGALW AMYVCVLLCM MLAMAFTAGG VLVGKVVEEP VQVTENLNFD YTKPSPVAFV PVGRLVPPQQ
301: RMQLEVLLTL PESDYNRRLG VFQVRAELLS ADGKVVTASS QPCMLKFKSV HMHFIETFFQ SVSLLSGYSS ESQVIKLKMT GIKEAFKPIT GVRMVLEQRA
401: EFATGAGIPE IYDASIKLEA ELPLLKRVLW HWRWTMFVWS SMAVFVFELL LAVVCCRPCI FPRS
001: MDSESESESN PSTTDEFDRF LDAPDEFYYD CLPIRSNSHQ PSSLLRRRKS AHRRDLISSD IETEPSSSSD GFDVGEKSSY VEKNAELRGD IDTSDVIEST
101: KDSIDLSSEK ENDLDVISSS GNDMDVIDSG RNRVDPFQEE STVTTVSSDD QGDDDYAGSV PQFREPPNST EWSLLGFLVG LVIKAIEFQV SFMTSLLTFP
201: PWLLRNCFLF FFDPFSTIRF GRRFLMARVA GISDMIFGYM NPFRLKDTKQ MLSIVCKFGW GMFWAVYVGI VLFGLLVSSL MIGGYVINRI ADKPFEVKET
301: LNFDYTKNSP EAYVPISSCA GVECEGSCKE SNEMSKIRGL RVIPRDQKLD IILSMTLPES AYNKNLGMFQ VRVDFLSVDG QTIASIRRPC MLRFRSEPIR
401: LVQTFFKVVP LVTGYVSEIQ TLSLKLKGFV EKDIPTACLK IIIEQRAEFR PGAGIPELYD ASLSVESGLP FFRKIIWKWR KTLFVWISMS LFITELLFTL
501: VCCRPLIIPR TQPRDRSPSN PTGVWR
101: KDSIDLSSEK ENDLDVISSS GNDMDVIDSG RNRVDPFQEE STVTTVSSDD QGDDDYAGSV PQFREPPNST EWSLLGFLVG LVIKAIEFQV SFMTSLLTFP
201: PWLLRNCFLF FFDPFSTIRF GRRFLMARVA GISDMIFGYM NPFRLKDTKQ MLSIVCKFGW GMFWAVYVGI VLFGLLVSSL MIGGYVINRI ADKPFEVKET
301: LNFDYTKNSP EAYVPISSCA GVECEGSCKE SNEMSKIRGL RVIPRDQKLD IILSMTLPES AYNKNLGMFQ VRVDFLSVDG QTIASIRRPC MLRFRSEPIR
401: LVQTFFKVVP LVTGYVSEIQ TLSLKLKGFV EKDIPTACLK IIIEQRAEFR PGAGIPELYD ASLSVESGLP FFRKIIWKWR KTLFVWISMS LFITELLFTL
501: VCCRPLIIPR TQPRDRSPSN PTGVWR
Arabidopsis Description
SEI2Seipin-2 [Source:UniProtKB/Swiss-Prot;Acc:F4I340]
SUBAcon: [plasma membrane,nucleus,cytosol]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.