Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 7
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032334.1-P | Field mustard | mitochondrion | 59.26 | 83.33 |
| CDX90209 | Canola | cytosol, nucleus, plasma membrane | 97.41 | 51.67 |
| VIT_10s0003g01840.t01 | Wine grape | plasma membrane | 51.48 | 46.96 |
| AT1G29760.1 | Thale cress | cytosol, nucleus, plasma membrane | 77.04 | 39.54 |
| Bra021906.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 55.93 | 36.21 |
| Bra006356.1-P | Field mustard | extracellular | 32.96 | 32.72 |
| KRH11077 | Soybean | cytosol, nucleus, peroxisome | 52.96 | 28.26 |
| KRH59037 | Soybean | cytosol, nucleus, plasma membrane, plastid | 52.96 | 27.45 |
| PGSC0003DMT400073048 | Potato | nucleus | 53.33 | 25.67 |
| GSMUA_Achr9P24190_001 | Banana | cytosol, peroxisome, plasma membrane | 47.78 | 25.34 |
| Solyc02g071900.2.1 | Tomato | cytosol | 52.59 | 25.31 |
| Bra023566.1-P | Field mustard | plasma membrane | 32.59 | 24.72 |
| Os09t0534000-01 | Rice | cytosol, nucleus, plasma membrane, plastid | 40.0 | 23.63 |
| Zm00001d021305_P001 | Maize | plastid | 40.0 | 23.38 |
| EER99253 | Sorghum | plastid | 40.37 | 23.29 |
| HORVU5Hr1G082480.1 | Barley | mitochondrion | 38.89 | 22.73 |
| TraesCS5A01G322900.1 | Wheat | cytosol, nucleus, vacuole | 38.52 | 22.41 |
| TraesCS5B01G323400.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 37.78 | 19.47 |
Protein Annotations
| EnsemblPlants:Bra010814.1 | EnsemblPlants:Bra010814.1-P | EnsemblPlantsGene:Bra010814 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0019915 | InterPro:Seipin | PANTHER:PTHR21212 | PANTHER:PTHR21212:SF1 | PFAM:PF06775 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI00025470DC | UniProt:M4D2W1 | MapMan:5.9.1 | : |
Description
AT1G29760 (E=1e-119) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Adipose-regulatory protein, Seipin (InterPro:IPR009617); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G34380.1); Has 396 Blast hits to 327 proteins in 54 species: Archae - 0; Bacteria - 233; Metazoa - 115; Fungi - 10; Plants - 31; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Coordinates
chrA08:-:16575274..16576161
Molecular Weight (calculated)
30654.1 Da
IEP (calculated)
9.595
GRAVY (calculated)
0.145
Length
270 amino acids
Sequence
(BLAST)
(BLAST)
001: MLNVACKCGW GLFYAVYVGA VLFGLLLLSL MLGGFMINRV ADKPFVLKEV LNFDYTKNSP EAFVSITSCD GSCKESNEML KIRGVRAIPR DHKLEITLSM
101: TVPESEYNKN LGMFQVRVDF LSADGQTLNS IRRPCMLRFR SEPIRLVQTF LKMVPLVTGY VAEIQTLSLK LKGFAEKDIP TACLKVMIEQ RAEFRPGAGI
201: PELYDASLSL ESDLPFFKKV IWKWRKTLYV WISMSLFVME LLFALVCCRP LVIPRTRSRD RPTSNPPGSR
101: TVPESEYNKN LGMFQVRVDF LSADGQTLNS IRRPCMLRFR SEPIRLVQTF LKMVPLVTGY VAEIQTLSLK LKGFAEKDIP TACLKVMIEQ RAEFRPGAGI
201: PELYDASLSL ESDLPFFKKV IWKWRKTLYV WISMSLFVME LLFALVCCRP LVIPRTRSRD RPTSNPPGSR
001: MDSESESESN PSTTDEFDRF LDAPDEFYYD CLPIRSNSHQ PSSLLRRRKS AHRRDLISSD IETEPSSSSD GFDVGEKSSY VEKNAELRGD IDTSDVIEST
101: KDSIDLSSEK ENDLDVISSS GNDMDVIDSG RNRVDPFQEE STVTTVSSDD QGDDDYAGSV PQFREPPNST EWSLLGFLVG LVIKAIEFQV SFMTSLLTFP
201: PWLLRNCFLF FFDPFSTIRF GRRFLMARVA GISDMIFGYM NPFRLKDTKQ MLSIVCKFGW GMFWAVYVGI VLFGLLVSSL MIGGYVINRI ADKPFEVKET
301: LNFDYTKNSP EAYVPISSCA GVECEGSCKE SNEMSKIRGL RVIPRDQKLD IILSMTLPES AYNKNLGMFQ VRVDFLSVDG QTIASIRRPC MLRFRSEPIR
401: LVQTFFKVVP LVTGYVSEIQ TLSLKLKGFV EKDIPTACLK IIIEQRAEFR PGAGIPELYD ASLSVESGLP FFRKIIWKWR KTLFVWISMS LFITELLFTL
501: VCCRPLIIPR TQPRDRSPSN PTGVWR
101: KDSIDLSSEK ENDLDVISSS GNDMDVIDSG RNRVDPFQEE STVTTVSSDD QGDDDYAGSV PQFREPPNST EWSLLGFLVG LVIKAIEFQV SFMTSLLTFP
201: PWLLRNCFLF FFDPFSTIRF GRRFLMARVA GISDMIFGYM NPFRLKDTKQ MLSIVCKFGW GMFWAVYVGI VLFGLLVSSL MIGGYVINRI ADKPFEVKET
301: LNFDYTKNSP EAYVPISSCA GVECEGSCKE SNEMSKIRGL RVIPRDQKLD IILSMTLPES AYNKNLGMFQ VRVDFLSVDG QTIASIRRPC MLRFRSEPIR
401: LVQTFFKVVP LVTGYVSEIQ TLSLKLKGFV EKDIPTACLK IIIEQRAEFR PGAGIPELYD ASLSVESGLP FFRKIIWKWR KTLFVWISMS LFITELLFTL
501: VCCRPLIIPR TQPRDRSPSN PTGVWR
Arabidopsis Description
SEI2Seipin-2 [Source:UniProtKB/Swiss-Prot;Acc:F4I340]
SUBAcon: [plasma membrane,nucleus,cytosol]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.