Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010814.1-P | Field mustard | plasma membrane | 51.67 | 97.41 |
| CDY35278 | Canola | cytosol, nucleus, plasma membrane | 79.76 | 81.69 |
| CDX99851 | Canola | mitochondrion | 46.76 | 57.49 |
| AT1G29760.1 | Thale cress | cytosol, nucleus, plasma membrane | 56.97 | 55.13 |
| CDY43679 | Canola | plasma membrane | 35.36 | 51.72 |
| CDY66765 | Canola | cytosol, peroxisome, plasma membrane | 34.97 | 48.63 |
| VIT_10s0003g01840.t01 | Wine grape | plasma membrane | 28.09 | 48.31 |
| KRH59037 | Soybean | cytosol, nucleus, plasma membrane, plastid | 36.54 | 35.7 |
| KRH11077 | Soybean | cytosol, nucleus, peroxisome | 34.58 | 34.78 |
| EER99253 | Sorghum | plastid | 30.45 | 33.12 |
| Os09t0534000-01 | Rice | cytosol, nucleus, plasma membrane, plastid | 29.67 | 33.04 |
| Solyc02g071900.2.1 | Tomato | cytosol | 35.17 | 31.91 |
| PGSC0003DMT400073048 | Potato | nucleus | 35.17 | 31.91 |
| GSMUA_Achr9P24190_001 | Banana | cytosol, peroxisome, plasma membrane | 31.83 | 31.83 |
| Zm00001d021305_P001 | Maize | plastid | 28.68 | 31.6 |
| HORVU5Hr1G082480.1 | Barley | mitochondrion | 27.5 | 30.3 |
| TraesCS5A01G322900.1 | Wheat | cytosol, nucleus, vacuole | 25.93 | 28.45 |
| CDX78692 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 19.25 | 27.53 |
| CDX70695 | Canola | plasma membrane | 19.06 | 27.09 |
| TraesCS5B01G323400.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 27.31 | 26.53 |
| CDY38111 | Canola | plasma membrane | 18.47 | 26.26 |
| CDX85507 | Canola | plasma membrane | 18.47 | 26.26 |
Protein Annotations
| EnsemblPlants:CDX90209 | EnsemblPlantsGene:GSBRNA2T00150766001 | GO:A0A078DNY2 | GO:GO:0008150 | GO:GO:0019915 | InterPro:Seipin |
| PANTHER:PTHR21212 | PANTHER:PTHR21212:SF1 | PFAM:PF06775 | ProteinID:CDX90209 | ProteinID:CDX90209.1 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI0004EE98A5 | MapMan:5.9.1 | : | : | : |
Description
BnaA08g17750D
Coordinates
chrLK031862:+:663659..665450
Molecular Weight (calculated)
57903.4 Da
IEP (calculated)
6.853
GRAVY (calculated)
-0.262
Length
509 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSSSSHDE ELDRFLDAPD EFYYDCMPPT RRHSHRQYSS PSANPSAATL RRRNSAPHRN SIRSDVETEP SSSSSNGFKV DGKPSDDVIE STKDLIDLSP
101: EKDNDFAVTD SEKTDESMDV TDSGQARVDP VREGVSLTEE STVTTARDDR EHDNARSSPP ELREPNQTEW SLLGYLVGLV LKAIEFQFNL FISLVKYPPL
201: LLHWCFLFFF DPFSTIRLGR RFITTVITNK LSWFDDTKRV LNVACKCGWG LFYAVYVGAV LFGLLLLSLM LGGFMINRVA DKPFVLKEVL NFDYTKNSPE
301: AFVSITSCDG SCKESNEMLK IRGVRAIPRD HKLEITLSMT VPESEYNKNL GMFQVRVDFL SADGQTLNSI RRPCMLRFRS EPIRLVQTFL KMVPLVTGYV
401: SEIQTLSLKL KGFAEKDIPT ACLKVMIEQR AEFRPGAGIP ELYDAALSLE SDLPFFKKVI WKWRKTLYVW ISMSLFVMEL LFALVCCRPL VIPRTRSRDR
501: TPSNRTGSR
101: EKDNDFAVTD SEKTDESMDV TDSGQARVDP VREGVSLTEE STVTTARDDR EHDNARSSPP ELREPNQTEW SLLGYLVGLV LKAIEFQFNL FISLVKYPPL
201: LLHWCFLFFF DPFSTIRLGR RFITTVITNK LSWFDDTKRV LNVACKCGWG LFYAVYVGAV LFGLLLLSLM LGGFMINRVA DKPFVLKEVL NFDYTKNSPE
301: AFVSITSCDG SCKESNEMLK IRGVRAIPRD HKLEITLSMT VPESEYNKNL GMFQVRVDFL SADGQTLNSI RRPCMLRFRS EPIRLVQTFL KMVPLVTGYV
401: SEIQTLSLKL KGFAEKDIPT ACLKVMIEQR AEFRPGAGIP ELYDAALSLE SDLPFFKKVI WKWRKTLYVW ISMSLFVMEL LFALVCCRPL VIPRTRSRDR
501: TPSNRTGSR
001: MDSESESESN PSTTDEFDRF LDAPDEFYYD CLPIRSNSHQ PSSLLRRRKS AHRRDLISSD IETEPSSSSD GFDVGEKSSY VEKNAELRGD IDTSDVIEST
101: KDSIDLSSEK ENDLDVISSS GNDMDVIDSG RNRVDPFQEE STVTTVSSDD QGDDDYAGSV PQFREPPNST EWSLLGFLVG LVIKAIEFQV SFMTSLLTFP
201: PWLLRNCFLF FFDPFSTIRF GRRFLMARVA GISDMIFGYM NPFRLKDTKQ MLSIVCKFGW GMFWAVYVGI VLFGLLVSSL MIGGYVINRI ADKPFEVKET
301: LNFDYTKNSP EAYVPISSCA GVECEGSCKE SNEMSKIRGL RVIPRDQKLD IILSMTLPES AYNKNLGMFQ VRVDFLSVDG QTIASIRRPC MLRFRSEPIR
401: LVQTFFKVVP LVTGYVSEIQ TLSLKLKGFV EKDIPTACLK IIIEQRAEFR PGAGIPELYD ASLSVESGLP FFRKIIWKWR KTLFVWISMS LFITELLFTL
501: VCCRPLIIPR TQPRDRSPSN PTGVWR
101: KDSIDLSSEK ENDLDVISSS GNDMDVIDSG RNRVDPFQEE STVTTVSSDD QGDDDYAGSV PQFREPPNST EWSLLGFLVG LVIKAIEFQV SFMTSLLTFP
201: PWLLRNCFLF FFDPFSTIRF GRRFLMARVA GISDMIFGYM NPFRLKDTKQ MLSIVCKFGW GMFWAVYVGI VLFGLLVSSL MIGGYVINRI ADKPFEVKET
301: LNFDYTKNSP EAYVPISSCA GVECEGSCKE SNEMSKIRGL RVIPRDQKLD IILSMTLPES AYNKNLGMFQ VRVDFLSVDG QTIASIRRPC MLRFRSEPIR
401: LVQTFFKVVP LVTGYVSEIQ TLSLKLKGFV EKDIPTACLK IIIEQRAEFR PGAGIPELYD ASLSVESGLP FFRKIIWKWR KTLFVWISMS LFITELLFTL
501: VCCRPLIIPR TQPRDRSPSN PTGVWR
Arabidopsis Description
SEI2Seipin-2 [Source:UniProtKB/Swiss-Prot;Acc:F4I340]
SUBAcon: [cytosol,nucleus,plasma membrane]
SUBAcon: [cytosol,nucleus,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.