Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY66765 | Canola | cytosol, peroxisome, plasma membrane | 94.83 | 90.16 |
| Bra021906.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 92.53 | 77.22 |
| VIT_10s0003g01840.t01 | Wine grape | plasma membrane | 41.09 | 48.31 |
| AT2G34380.1 | Thale cress | cytosol, nucleus, plasma membrane | 66.38 | 45.38 |
| CDX99851 | Canola | mitochondrion | 50.29 | 42.27 |
| CDY35278 | Canola | cytosol, nucleus, plasma membrane | 52.3 | 36.62 |
| CDX90209 | Canola | cytosol, nucleus, plasma membrane | 51.72 | 35.36 |
| Os09t0534000-01 | Rice | cytosol, nucleus, plasma membrane, plastid | 42.82 | 32.6 |
| Zm00001d021305_P001 | Maize | plastid | 40.23 | 30.3 |
| KRH11077 | Soybean | cytosol, nucleus, peroxisome | 43.97 | 30.24 |
| EER99253 | Sorghum | plastid | 40.52 | 30.13 |
| PGSC0003DMT400073048 | Potato | nucleus | 48.28 | 29.95 |
| Solyc02g071900.2.1 | Tomato | cytosol | 47.99 | 29.77 |
| TraesCS5A01G322900.1 | Wheat | cytosol, nucleus, vacuole | 39.37 | 29.53 |
| HORVU5Hr1G082480.1 | Barley | mitochondrion | 38.79 | 29.22 |
| GSMUA_Achr9P24190_001 | Banana | cytosol, peroxisome, plasma membrane | 42.24 | 28.88 |
| CDX78692 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 29.31 | 28.65 |
| CDX70695 | Canola | plasma membrane | 28.45 | 27.65 |
| KRH59037 | Soybean | cytosol, nucleus, plasma membrane, plastid | 41.09 | 27.45 |
| CDX85507 | Canola | plasma membrane | 27.87 | 27.09 |
| TraesCS5B01G323400.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 39.66 | 26.34 |
| CDY38111 | Canola | plasma membrane | 27.01 | 26.26 |
Protein Annotations
| EnsemblPlants:CDY43679 | EnsemblPlantsGene:GSBRNA2T00077030001 | GO:A0A078I248 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0019915 | InterPro:Seipin | PANTHER:PTHR21212 | PANTHER:PTHR21212:SF1 | PFAM:PF06775 |
| ProteinID:CDY43679 | ProteinID:CDY43679.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EE9627 | UniProt:A0A078I248 |
| MapMan:5.9.1 | : | : | : | : | : |
Description
BnaA04g20120DBnaA04g20120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I248]
Coordinates
chrLK032564:-:213047..214429
Molecular Weight (calculated)
39599.9 Da
IEP (calculated)
9.040
GRAVY (calculated)
0.218
Length
348 amino acids
Sequence
(BLAST)
(BLAST)
001: MNGGKPENSK ETTSTDHHQG DDFLLEATTT DRSLLSSLAT LVIKSIEFQV SLMLSFIKLK FFPPWFIHIC LSFVMDPYRT MRRGRRYLIS KVVELCELGL
101: NDDKLVLETV RRLALGLLWA VHVGIVLFAM LVSAFMISGF VISLLAREPL VVKESLSFDY TKNSPEAYVP ITRVNSPNQR TEVSVSMTLP ESEYNRNLGM
201: FQVRVEFLSE NGEVLATSRR PCMLRFRTEP VRLVQTFLKI APLVSGYVSE TQTLKLKLKG FAEKDVVSTA CVKVMVEQRA EFRGGAGVPE IYEASLLLES
301: ELPLLKRIIW NWRRTLFVWI SMCLFITELV CALVFVRCLI IPRAGQRT
101: NDDKLVLETV RRLALGLLWA VHVGIVLFAM LVSAFMISGF VISLLAREPL VVKESLSFDY TKNSPEAYVP ITRVNSPNQR TEVSVSMTLP ESEYNRNLGM
201: FQVRVEFLSE NGEVLATSRR PCMLRFRTEP VRLVQTFLKI APLVSGYVSE TQTLKLKLKG FAEKDVVSTA CVKVMVEQRA EFRGGAGVPE IYEASLLLES
301: ELPLLKRIIW NWRRTLFVWI SMCLFITELV CALVFVRCLI IPRAGQRT
001: MESESESSST HSSCDRFLDA EDEFFYDSFS NHYDCLNSSP PANLRRRRLP MDTDSSSSSS TSSLESCEKR STVGENDELE VSLVDFETIE IDVDVTDSAN
101: SSIDSISEKG EDFEVIDSCT DTEKNMGEND SGRVDPFTVT TLNDERGEIY TGPEYTSTDW SLTSLVIRSI EFQVSLMITF IRFPPWLISK CLSFVFDPYR
201: TMRRGRRYLV SWIVGLCDSG LKDDKPVLEL VRRVTWGLFC AVYVGIMLFA LLVSAFMISG FVITYLAHEP LVIKESLNFD YTKSSPEAYV PISSCAGVAF
301: GLSGKESIET GKVKGLKDRT EITVSMTLPE SEYNRNLGMF QVRVDFLSAS GHVLASSRRP CMVKFSSEPI RLVQTLLKIA PLVTGYVSEI QTLNLKLKGL
401: VEKDIIPTAC LKIMIEQRAE FRPGAGIPEI YDASLFLESK LPFLKRIIWN WRKTLFVWIS MSLFIMELLF ALVFFRPLII PRTGQRTQQR DGTHSINNNL
501: YLDGQAGSR
101: SSIDSISEKG EDFEVIDSCT DTEKNMGEND SGRVDPFTVT TLNDERGEIY TGPEYTSTDW SLTSLVIRSI EFQVSLMITF IRFPPWLISK CLSFVFDPYR
201: TMRRGRRYLV SWIVGLCDSG LKDDKPVLEL VRRVTWGLFC AVYVGIMLFA LLVSAFMISG FVITYLAHEP LVIKESLNFD YTKSSPEAYV PISSCAGVAF
301: GLSGKESIET GKVKGLKDRT EITVSMTLPE SEYNRNLGMF QVRVDFLSAS GHVLASSRRP CMVKFSSEPI RLVQTLLKIA PLVTGYVSEI QTLNLKLKGL
401: VEKDIIPTAC LKIMIEQRAE FRPGAGIPEI YDASLFLESK LPFLKRIIWN WRKTLFVWIS MSLFIMELLF ALVFFRPLII PRTGQRTQQR DGTHSINNNL
501: YLDGQAGSR
Arabidopsis Description
SEI3Seipin-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8L615]
SUBAcon: [plasma membrane,nucleus,cytosol]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.