Factsheet for TraesCS5B01G323400.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G082480.1	Barley	mitochondrion	67.75	76.84
TraesCS5A01G322900.1	Wheat	cytosol, nucleus, vacuole	66.03	74.57
Os09t0534000-01	Rice	cytosol, nucleus, plasma membrane, plastid	56.87	65.21
EER99253	Sorghum	plastid	54.2	60.68
Zm00001d021305_P001	Maize	plastid	52.86	59.96
Bra032334.1-P	Field mustard	mitochondrion	15.65	42.71
VIT_10s0003g01840.t01	Wine grape	plasma membrane	22.71	40.2
CDY43679	Canola	plasma membrane	26.34	39.66
Bra010814.1-P	Field mustard	plasma membrane	19.47	37.78
CDY66765	Canola	cytosol, peroxisome, plasma membrane	26.34	37.7
GSMUA_Achr9P24190_001	Banana	cytosol, peroxisome, plasma membrane	35.11	36.15
Bra021906.1-P	Field mustard	cytosol, peroxisome, plasma membrane	27.48	34.53
CDX99851	Canola	mitochondrion	25.38	32.13
KRH11077	Soybean	cytosol, nucleus, peroxisome	29.01	30.04
Solyc07g062230.2.1	Tomato	cytosol, peroxisome, plasma membrane	25.57	29.52
PGSC0003DMT400073048	Potato	nucleus	31.11	29.06
KRH59037	Soybean	cytosol, nucleus, plasma membrane, plastid	28.82	28.98
Solyc02g071900.2.1	Tomato	cytosol	30.92	28.88
PGSC0003DMT400018200	Potato	cytosol, nucleus, peroxisome	25.19	28.51
AT2G34380.1	Thale cress	cytosol, nucleus, plasma membrane	27.67	28.49
CDY35278	Canola	cytosol, nucleus, plasma membrane	26.72	28.17
VIT_19s0014g00840.t01	Wine grape	plasma membrane	27.1	27.63
CDX90209	Canola	cytosol, nucleus, plasma membrane	26.53	27.31
AT1G29760.1	Thale cress	cytosol, nucleus, plasma membrane	27.29	27.19
TraesCS4B01G134700.1	Wheat	plasma membrane	17.18	22.06

Protein Annotations

EnsemblPlants:TraesCS5B01G323400.1	EnsemblPlantsGene:TraesCS5B01G323400	GO:GO:0008150	GO:GO:0019915	InterPro:Seipin	PANTHER:PTHR21212
PANTHER:PTHR21212:SF1	PFAM:PF06775	SEG:seg	TMHMM:TMhelix	MapMan:5.9.1	:

Description

No Description!

Coordinates

chr5B:-:507937661..507940368

Molecular Weight (calculated)

56773.4 Da

IEP (calculated)

4.382

GRAVY (calculated)

-0.099

Length

524 amino acids

Sequence
(BLAST)

001: MDADDPAATS SEPPTSEADF FDVPDALPTP PPPPSPHTPS SSTLRRRPRR AKILMQPDDP VSPSASAASI VTAVDEPDKD KDRAKAKPDS DSSVTVTVTA
101: ADEPDKAKAK PDSDSDSDSS EATSAPRSPP PLEEEVDQKD AEPAAPEANV DEKDSEPAAP EANVDKKDSE PAAPEAEVDE KDAESAVPEE EVDEKDAESE
201: AAAPDYRPPP APPAFVESLA VFVIKAVVFQ VSALVACLTF PFRLLQWWFL FVTDPLGSVQ RARDWALGVA GQATGAVSAW LGAGDGVARV VARLLWGALW
301: AMYVCVLLCA MLAMAFTAGG VLVGKVVEEP VQVTENLNFD YTKPSPVAFV PVGRLVPPQQ RMQLEVLLTL PESDYNRRLG VFQVRAELLS ADGKVVTASS
401: QPCMLKFKSV HMHFIETFFQ SVSLLSGYSS ESQVIKLKMT GIREAFKPIT GVRIVLEQRA EFATGAGIPE IYAASIKLEA ELPLLKRILW HWRWTMFVWS
501: SMAVFVFELL LAVVCCRPCI FPRS

Best Arabidopsis Sequence Match ( AT1G29760.1 )
(BLAST)

001: MDSESESESN PSTTDEFDRF LDAPDEFYYD CLPIRSNSHQ PSSLLRRRKS AHRRDLISSD IETEPSSSSD GFDVGEKSSY VEKNAELRGD IDTSDVIEST
101: KDSIDLSSEK ENDLDVISSS GNDMDVIDSG RNRVDPFQEE STVTTVSSDD QGDDDYAGSV PQFREPPNST EWSLLGFLVG LVIKAIEFQV SFMTSLLTFP
201: PWLLRNCFLF FFDPFSTIRF GRRFLMARVA GISDMIFGYM NPFRLKDTKQ MLSIVCKFGW GMFWAVYVGI VLFGLLVSSL MIGGYVINRI ADKPFEVKET
301: LNFDYTKNSP EAYVPISSCA GVECEGSCKE SNEMSKIRGL RVIPRDQKLD IILSMTLPES AYNKNLGMFQ VRVDFLSVDG QTIASIRRPC MLRFRSEPIR
401: LVQTFFKVVP LVTGYVSEIQ TLSLKLKGFV EKDIPTACLK IIIEQRAEFR PGAGIPELYD ASLSVESGLP FFRKIIWKWR KTLFVWISMS LFITELLFTL
501: VCCRPLIIPR TQPRDRSPSN PTGVWR

Arabidopsis Description

SEI2Seipin-2 [Source:UniProtKB/Swiss-Prot;Acc:F4I340]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.