Factsheet for Bra032334.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
plasma membrane 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010814.1-P	Field mustard	plasma membrane	83.33	59.26
CDX99851	Canola	mitochondrion	88.54	41.06
VIT_10s0003g01840.t01	Wine grape	plasma membrane	57.81	37.5
Bra021906.1-P	Field mustard	cytosol, peroxisome, plasma membrane	63.02	29.02
AT1G29760.1	Thale cress	cytosol, nucleus, plasma membrane	78.65	28.71
Bra006356.1-P	Field mustard	extracellular	35.94	25.37
KRH11077	Soybean	cytosol, nucleus, peroxisome	55.21	20.95
Bra023566.1-P	Field mustard	plasma membrane	38.54	20.79
PGSC0003DMT400073048	Potato	nucleus	59.9	20.5
Solyc02g071900.2.1	Tomato	cytosol	58.85	20.14
KRH59037	Soybean	cytosol, nucleus, plasma membrane, plastid	53.12	19.58
GSMUA_Achr9P24190_001	Banana	cytosol, peroxisome, plasma membrane	50.0	18.86
Os09t0534000-01	Rice	cytosol, nucleus, plasma membrane, plastid	43.75	18.38
EER99253	Sorghum	plastid	44.79	18.38
TraesCS5A01G322900.1	Wheat	cytosol, nucleus, vacuole	43.75	18.1
Zm00001d021305_P001	Maize	plastid	43.23	17.97
HORVU5Hr1G082480.1	Barley	mitochondrion	42.19	17.53
TraesCS5B01G323400.1	Wheat	cytosol, nucleus, plasma membrane, plastid	42.71	15.65

Protein Annotations

EnsemblPlants:Bra032334.1	EnsemblPlants:Bra032334.1-P	EnsemblPlantsGene:Bra032334	GO:GO:0005575	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0019915	InterPro:Seipin	PANTHER:PTHR21212	PANTHER:PTHR21212:SF1	PFAM:PF06775
TMHMM:TMhelix	UniParc:UPI000254263B	UniProt:M4EU52	MapMan:5.9.1	:	:

Description

AT1G29760 (E=9e-086) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Adipose-regulatory protein, Seipin (InterPro:IPR009617); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G34380.1); Has 396 Blast hits to 327 proteins in 54 species: Archae - 0; Bacteria - 233; Metazoa - 115; Fungi - 10; Plants - 31; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).

Coordinates

chrA09:-:22453936..22454577

Molecular Weight (calculated)

22264.8 Da

IEP (calculated)

10.837

GRAVY (calculated)

0.063

Length

192 amino acids

Sequence
(BLAST)

001: MMKIRGLRAI PRGHKLEITL SLTLPESYYN KNLGMFQVRV DLLSADGQML DTIRRPCMLR FRSEPIRLVQ TFFKVVPLVT GYVSEIQTLT LKLKGFAEKD
101: TPTACLKVMI EQRAEFRPGA GIPELYDASL SLESDLPFFK RVVWKWRRTL FVWISMSLFF TELLFALVFC RSLIIPRTRL RDIPASNRTG SR

Best Arabidopsis Sequence Match ( AT1G29760.1 )
(BLAST)

001: MDSESESESN PSTTDEFDRF LDAPDEFYYD CLPIRSNSHQ PSSLLRRRKS AHRRDLISSD IETEPSSSSD GFDVGEKSSY VEKNAELRGD IDTSDVIEST
101: KDSIDLSSEK ENDLDVISSS GNDMDVIDSG RNRVDPFQEE STVTTVSSDD QGDDDYAGSV PQFREPPNST EWSLLGFLVG LVIKAIEFQV SFMTSLLTFP
201: PWLLRNCFLF FFDPFSTIRF GRRFLMARVA GISDMIFGYM NPFRLKDTKQ MLSIVCKFGW GMFWAVYVGI VLFGLLVSSL MIGGYVINRI ADKPFEVKET
301: LNFDYTKNSP EAYVPISSCA GVECEGSCKE SNEMSKIRGL RVIPRDQKLD IILSMTLPES AYNKNLGMFQ VRVDFLSVDG QTIASIRRPC MLRFRSEPIR
401: LVQTFFKVVP LVTGYVSEIQ TLSLKLKGFV EKDIPTACLK IIIEQRAEFR PGAGIPELYD ASLSVESGLP FFRKIIWKWR KTLFVWISMS LFITELLFTL
501: VCCRPLIIPR TQPRDRSPSN PTGVWR

Arabidopsis Description

SEI2Seipin-2 [Source:UniProtKB/Swiss-Prot;Acc:F4I340]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.