Factsheet for HORVU5Hr1G082480.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G323400.1	Wheat	cytosol, nucleus, plasma membrane, plastid	76.84	67.75
TraesCS5A01G322900.1	Wheat	cytosol, nucleus, vacuole	66.45	66.16
Os09t0534000-01	Rice	cytosol, nucleus, plasma membrane, plastid	60.82	61.49
EER99253	Sorghum	plastid	60.17	59.4
Zm00001d021305_P001	Maize	plastid	57.79	57.79
Bra032334.1-P	Field mustard	mitochondrion	17.53	42.19
VIT_10s0003g01840.t01	Wine grape	plasma membrane	25.11	39.19
Bra010814.1-P	Field mustard	plasma membrane	22.73	38.89
CDY43679	Canola	plasma membrane	29.22	38.79
CDY66765	Canola	cytosol, peroxisome, plasma membrane	29.22	36.89
GSMUA_Achr9P24190_001	Banana	cytosol, peroxisome, plasma membrane	38.31	34.77
Bra021906.1-P	Field mustard	cytosol, peroxisome, plasma membrane	30.3	33.57
CDX99851	Canola	mitochondrion	28.36	31.64
CDY35278	Canola	cytosol, nucleus, plasma membrane	31.17	28.97
AT2G34380.1	Thale cress	cytosol, nucleus, plasma membrane	31.82	28.88
Solyc07g062230.2.1	Tomato	cytosol, peroxisome, plasma membrane	28.36	28.85
KRH11077	Soybean	cytosol, nucleus, peroxisome	31.39	28.66
PGSC0003DMT400018200	Potato	cytosol, nucleus, peroxisome	28.36	28.29
KRH59037	Soybean	cytosol, nucleus, plasma membrane, plastid	31.17	27.64
CDX90209	Canola	cytosol, nucleus, plasma membrane	30.3	27.5
PGSC0003DMT400073048	Potato	nucleus	33.12	27.27
Solyc02g071900.2.1	Tomato	cytosol	33.12	27.27
VIT_19s0014g00840.t01	Wine grape	plasma membrane	30.3	27.24
AT1G29760.1	Thale cress	cytosol, nucleus, plasma membrane	30.09	26.43
HORVU4Hr1G025360.2	Barley	peroxisome, plasma membrane, plastid	19.05	21.26

Protein Annotations

EnsemblPlants:HORVU5Hr1G082480.1	EnsemblPlantsGene:HORVU5Hr1G082480	GO:GO:0005575	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0019915	InterPro:Seipin	PANTHER:PTHR21212	PANTHER:PTHR21212:SF1	PFAM:PF06775	SEG:seg
TMHMM:TMhelix	UniParc:UPI000B481752	UniProt:A0A287S156	MapMan:5.9.1	:	:

Description

No Description!

Coordinates

chrchr5H:-:567662830..567665754

Molecular Weight (calculated)

50588.4 Da

IEP (calculated)

4.616

GRAVY (calculated)

-0.064

Length

462 amino acids

Sequence
(BLAST)

001: TPSSSTLRRR PRRAQILKQP DDPVSPSASA SSTVTAADEP DKDKAKHDSD SDSDFDSSEA TSAPRSPTPL EEEVDQKDAE PAAPEANVEE KDAEPATPEA
101: NVDEKDAEPA TPESDVSEKD AEPASSEEEV DEKVAEPEAS ATDHRPTAPP PVFLESLAML VIKAVAFQVS ALVACLVFPF RLMQWWYLFV TDPLGSAQRA
201: RDWALGVAGQ ATGAVNAWLG AGEGVARVVA RLLWGSLWAM YVCMVLCALL AMAFTAGGLL VGKVVEEPVQ VTENLNFDYT KPRPVAFVPV GRLVPPHQRM
301: QLEVLLTLPE SDYNRRLGVF QVRAELLSAD GKVVTASSQP CMLKFKSVHM HFIETFLQSV SLLSGYSSES QVIRLKMTGI KQAFEPITGV RILLEQRAEF
401: ATGAGIPEIY AASLKLEAEL PLLKKVLWHW RWTMFVWSSM AFFAFELLLA VVCCRPCIFP RS

Best Arabidopsis Sequence Match ( AT1G29760.1 )
(BLAST)

001: MDSESESESN PSTTDEFDRF LDAPDEFYYD CLPIRSNSHQ PSSLLRRRKS AHRRDLISSD IETEPSSSSD GFDVGEKSSY VEKNAELRGD IDTSDVIEST
101: KDSIDLSSEK ENDLDVISSS GNDMDVIDSG RNRVDPFQEE STVTTVSSDD QGDDDYAGSV PQFREPPNST EWSLLGFLVG LVIKAIEFQV SFMTSLLTFP
201: PWLLRNCFLF FFDPFSTIRF GRRFLMARVA GISDMIFGYM NPFRLKDTKQ MLSIVCKFGW GMFWAVYVGI VLFGLLVSSL MIGGYVINRI ADKPFEVKET
301: LNFDYTKNSP EAYVPISSCA GVECEGSCKE SNEMSKIRGL RVIPRDQKLD IILSMTLPES AYNKNLGMFQ VRVDFLSVDG QTIASIRRPC MLRFRSEPIR
401: LVQTFFKVVP LVTGYVSEIQ TLSLKLKGFV EKDIPTACLK IIIEQRAEFR PGAGIPELYD ASLSVESGLP FFRKIIWKWR KTLFVWISMS LFITELLFTL
501: VCCRPLIIPR TQPRDRSPSN PTGVWR

Arabidopsis Description

SEI2Seipin-2 [Source:UniProtKB/Swiss-Prot;Acc:F4I340]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.