Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- plasma membrane 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER99253 | Sorghum | plastid | 82.68 | 81.62 |
| Os09t0534000-01 | Rice | cytosol, nucleus, plasma membrane, plastid | 65.58 | 66.3 |
| HORVU5Hr1G082480.1 | Barley | mitochondrion | 57.79 | 57.79 |
| TraesCS5A01G322900.1 | Wheat | cytosol, nucleus, vacuole | 56.49 | 56.25 |
| TraesCS5B01G323400.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 59.96 | 52.86 |
| Bra032334.1-P | Field mustard | mitochondrion | 17.97 | 43.23 |
| VIT_10s0003g01840.t01 | Wine grape | plasma membrane | 26.41 | 41.22 |
| CDY43679 | Canola | plasma membrane | 30.3 | 40.23 |
| Bra010814.1-P | Field mustard | plasma membrane | 23.38 | 40.0 |
| CDY66765 | Canola | cytosol, peroxisome, plasma membrane | 30.3 | 38.25 |
| GSMUA_Achr9P24190_001 | Banana | cytosol, peroxisome, plasma membrane | 41.77 | 37.92 |
| Bra021906.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 31.6 | 35.01 |
| CDX99851 | Canola | mitochondrion | 30.74 | 34.3 |
| KRH11077 | Soybean | cytosol, nucleus, peroxisome | 33.77 | 30.83 |
| CDY35278 | Canola | cytosol, nucleus, plasma membrane | 32.47 | 30.18 |
| AT1G29760.1 | Thale cress | cytosol, nucleus, plasma membrane | 34.2 | 30.04 |
| VIT_19s0014g00840.t01 | Wine grape | plasma membrane | 33.12 | 29.77 |
| KRH59037 | Soybean | cytosol, nucleus, plasma membrane, plastid | 33.55 | 29.75 |
| Solyc07g062230.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 29.22 | 29.74 |
| AT2G34380.1 | Thale cress | cytosol, nucleus, plasma membrane | 31.82 | 28.88 |
| CDX90209 | Canola | cytosol, nucleus, plasma membrane | 31.6 | 28.68 |
| PGSC0003DMT400018200 | Potato | cytosol, nucleus, peroxisome | 28.57 | 28.51 |
| Solyc02g071900.2.1 | Tomato | cytosol | 33.55 | 27.63 |
| PGSC0003DMT400073048 | Potato | nucleus | 33.33 | 27.45 |
Protein Annotations
| EnsemblPlants:Zm00001d021305_P001 | EnsemblPlants:Zm00001d021305_T001 | EnsemblPlantsGene:Zm00001d021305 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0019915 | InterPro:Seipin | PANTHER:PTHR21212 | PANTHER:PTHR21212:SF1 | PFAM:PF06775 |
| ProteinID:ONM56799.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000221DA44 | UniProt:A0A1D6I9X6 | MapMan:5.9.1 |
Description
Seipin-2
Coordinates
chr7:-:148354226..148356976
Molecular Weight (calculated)
50110.1 Da
IEP (calculated)
5.082
GRAVY (calculated)
0.073
Length
462 amino acids
Sequence
(BLAST)
(BLAST)
001: MDADDPSAAT ASSSDETFFD ALDSLPSPSP SPSPSPSPSP SPSHISSSTL HRRPRRAKSV KQPDSILSSP PSASAATSTV TAVEDEHLKP DSSEATSATS
101: RTDPAPKEEE EQEEEEEEDI KATDVDAVVE VEAPAPTATP SPAPSILEYL AVLVVKAVVF QVSALVSCLA FPVRLLQWWF LFVTDPLGLA RRARAWVLGM
201: AGDAAGTLIA RLGGGDGMGK VARRIVWGSL WAAYVCAVLC ALLIMAFLGG GLLVGRIVEE PVQVTETLNF DYTKPSPMAF VPVPRLVPPN QRMQLEVLLT
301: LPESDYNRRL GVFQVRAEFL SADGKVISTS SQPCMLKFKS VHMHFIETFL QSVSLLSGYS SESQVIRLKM RGITQGLEPT TAVRIILEQR AEFGRGAGIP
401: EIYVASLKLE GELPLVRRLL WNWRWTFFVW SSTGLFAIEL LFGLVCCRSC IFPRSGHNVA AP
101: RTDPAPKEEE EQEEEEEEDI KATDVDAVVE VEAPAPTATP SPAPSILEYL AVLVVKAVVF QVSALVSCLA FPVRLLQWWF LFVTDPLGLA RRARAWVLGM
201: AGDAAGTLIA RLGGGDGMGK VARRIVWGSL WAAYVCAVLC ALLIMAFLGG GLLVGRIVEE PVQVTETLNF DYTKPSPMAF VPVPRLVPPN QRMQLEVLLT
301: LPESDYNRRL GVFQVRAEFL SADGKVISTS SQPCMLKFKS VHMHFIETFL QSVSLLSGYS SESQVIRLKM RGITQGLEPT TAVRIILEQR AEFGRGAGIP
401: EIYVASLKLE GELPLVRRLL WNWRWTFFVW SSTGLFAIEL LFGLVCCRSC IFPRSGHNVA AP
001: MDSESESESN PSTTDEFDRF LDAPDEFYYD CLPIRSNSHQ PSSLLRRRKS AHRRDLISSD IETEPSSSSD GFDVGEKSSY VEKNAELRGD IDTSDVIEST
101: KDSIDLSSEK ENDLDVISSS GNDMDVIDSG RNRVDPFQEE STVTTVSSDD QGDDDYAGSV PQFREPPNST EWSLLGFLVG LVIKAIEFQV SFMTSLLTFP
201: PWLLRNCFLF FFDPFSTIRF GRRFLMARVA GISDMIFGYM NPFRLKDTKQ MLSIVCKFGW GMFWAVYVGI VLFGLLVSSL MIGGYVINRI ADKPFEVKET
301: LNFDYTKNSP EAYVPISSCA GVECEGSCKE SNEMSKIRGL RVIPRDQKLD IILSMTLPES AYNKNLGMFQ VRVDFLSVDG QTIASIRRPC MLRFRSEPIR
401: LVQTFFKVVP LVTGYVSEIQ TLSLKLKGFV EKDIPTACLK IIIEQRAEFR PGAGIPELYD ASLSVESGLP FFRKIIWKWR KTLFVWISMS LFITELLFTL
501: VCCRPLIIPR TQPRDRSPSN PTGVWR
101: KDSIDLSSEK ENDLDVISSS GNDMDVIDSG RNRVDPFQEE STVTTVSSDD QGDDDYAGSV PQFREPPNST EWSLLGFLVG LVIKAIEFQV SFMTSLLTFP
201: PWLLRNCFLF FFDPFSTIRF GRRFLMARVA GISDMIFGYM NPFRLKDTKQ MLSIVCKFGW GMFWAVYVGI VLFGLLVSSL MIGGYVINRI ADKPFEVKET
301: LNFDYTKNSP EAYVPISSCA GVECEGSCKE SNEMSKIRGL RVIPRDQKLD IILSMTLPES AYNKNLGMFQ VRVDFLSVDG QTIASIRRPC MLRFRSEPIR
401: LVQTFFKVVP LVTGYVSEIQ TLSLKLKGFV EKDIPTACLK IIIEQRAEFR PGAGIPELYD ASLSVESGLP FFRKIIWKWR KTLFVWISMS LFITELLFTL
501: VCCRPLIIPR TQPRDRSPSN PTGVWR
Arabidopsis Description
SEI2Seipin-2 [Source:UniProtKB/Swiss-Prot;Acc:F4I340]
SUBAcon: [plasma membrane,nucleus,cytosol]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.