CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
endoplasmic reticulum 2
extracellular 1
golgi 1
plasma membrane 3
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	endoplasmic reticulum, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85507	Canola	plasma membrane	87.43	87.43
CDX78692	Canola	cytosol, endoplasmic reticulum, plasma membrane	80.73	81.18
CDX70695	Canola	plasma membrane	78.49	78.49
AT5G16460.1	Thale cress	plasma membrane	71.51	69.57
VIT_04s0023g00480.t01	Wine grape	plasma membrane, plastid, vacuole	27.65	38.98
KRH40303	Soybean	endoplasmic reticulum	41.34	36.36
Solyc04g056380.2.1	Tomato	golgi, nucleus, plasma membrane	38.83	33.74
KRH00920	Soybean	endoplasmic reticulum	41.62	33.48
PGSC0003DMT400018729	Potato	golgi, peroxisome, plasma membrane	37.71	32.14
GSMUA_Achr3P02430_001	Banana	cytosol, peroxisome, vacuole	36.87	31.5
Os12t0148700-01	Rice	peroxisome, plasma membrane, plastid	31.01	27.14
HORVU4Hr1G025360.2	Barley	peroxisome, plasma membrane, plastid	31.28	27.05
CDY43679	Canola	plasma membrane	26.26	27.01
OQU82879	Sorghum	plasma membrane	30.73	26.7
TraesCS4B01G134700.1	Wheat	plasma membrane	30.17	26.47
CDY66765	Canola	cytosol, peroxisome, plasma membrane	26.54	25.96
TraesCS4D01G129400.1	Wheat	plasma membrane	29.89	25.85
TraesCS4A01G184000.1	Wheat	plasma membrane	29.61	25.6
CDX99851	Canola	mitochondrion	26.26	22.71
CDX90209	Canola	cytosol, nucleus, plasma membrane	26.26	18.47
CDY35278	Canola	cytosol, nucleus, plasma membrane	25.42	18.31

Protein Annotations

EnsemblPlants:CDY38111	EnsemblPlantsGene:GSBRNA2T00065388001	GO:A0A078HKG0	GO:GO:0005575	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0019915	InterPro:Seipin	PANTHER:PTHR21212	PFAM:PF06775	ProteinID:CDY38111
ProteinID:CDY38111.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EBDE9B	UniProt:A0A078HKG0	MapMan:5.9.1

Description

BnaC02g06620DBnaC02g06620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HKG0]

Coordinates

chrLK032416:+:178414..180438

Molecular Weight (calculated)

41017.9 Da

IEP (calculated)

10.493

GRAVY (calculated)

0.131

Length

358 amino acids

Sequence
(BLAST)

001: MEELDIDLKI PDPLRADWFM VLVDIQADLI YNALMVLTSP LFLIYRSYCR AAAAISAAEN TVKRAPSRIK GGTARVVRKT WFGVMGACHV SAIMVVAMIF
101: AVVLGVGIVS LYVEKPVVVR ERLFFDYTED NPSAVFSFDK KKRPFGVPLG HKVHVSLVLW MPESDLNRGI GLFQLKVELL SSKGEIIARS SQPCMLRFRS
201: QPIRLARTFV MSVPLVAGIA NEAQTMRIDA LMHQEKGTRT KAVRVTLIPR AQTRLLPQLY EAEIVINSKP PWTKRMAYNW KWTLCVWTSM YLFVPILIAL
301: LWCFRPFLFP YVASRTVVED QNTEIRVVQE EVAGRRLRER RNKPRRRNVT TTQEIYIL

Best Arabidopsis Sequence Match ( AT5G16460.1 )
(BLAST)

001: MRILQNKTMK EQDNQLKIPE PLRADWFMVL VTIQADLIYN ALVVLSSPFF LLYRSYRRAV VTVSAAEKAV KRAPAQIAGG AGRVVRRTWF GILGACHVSM
101: VMVLALILAV VIGVGIVSLY VEKPVVVRDR LFFDYTEENP SAVFSFDKKK RSFSVPVGHS VHVSLVLWMP ESEINRRIGV FQLKVELLSL KGETIARSSQ
201: PCMLRFRSKP IRLARTFVMS VPLIAGIANE AQTMRIDALK HQEKMPRTKA VRATLIPRAQ TRTLPQLYEA EIVINSKPPW IKRMAYNWKW TLCVWTSMYL
301: YVAILTALLW CFRPVLFPYT SSRTISESEN LEIEVVEEEQ EQVMERRRRE RRNQPRRRNF ATTQKSYT

Arabidopsis Description

SEI1Seipin-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFD9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.