Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- peroxisome 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G129400.1 | Wheat | plasma membrane | 93.0 | 93.0 |
| TraesCS4B01G134700.1 | Wheat | plasma membrane | 87.44 | 88.73 |
| HORVU4Hr1G025360.2 | Barley | peroxisome, plasma membrane, plastid | 81.16 | 81.16 |
| OQU82879 | Sorghum | plasma membrane | 53.62 | 53.88 |
| Os12t0148700-01 | Rice | peroxisome, plasma membrane, plastid | 52.9 | 53.55 |
| VIT_04s0023g00480.t01 | Wine grape | plasma membrane, plastid, vacuole | 20.29 | 33.07 |
| Bra006356.1-P | Field mustard | extracellular | 21.01 | 31.99 |
| GSMUA_Achr3P02430_001 | Banana | cytosol, peroxisome, vacuole | 31.88 | 31.5 |
| Bra023566.1-P | Field mustard | plasma membrane | 26.57 | 30.9 |
| CDX85507 | Canola | plasma membrane | 26.09 | 30.17 |
| CDY38111 | Canola | plasma membrane | 25.6 | 29.61 |
| KRH40303 | Soybean | endoplasmic reticulum | 28.26 | 28.75 |
| AT5G16460.1 | Thale cress | plasma membrane | 25.36 | 28.53 |
| CDX70695 | Canola | plasma membrane | 24.64 | 28.49 |
| CDX78692 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 24.15 | 28.09 |
| Solyc04g056380.2.1 | Tomato | golgi, nucleus, plasma membrane | 26.57 | 26.7 |
| KRH00920 | Soybean | endoplasmic reticulum | 28.5 | 26.52 |
| PGSC0003DMT400018729 | Potato | golgi, peroxisome, plasma membrane | 26.33 | 25.95 |
| TraesCS5A01G322900.1 | Wheat | cytosol, nucleus, vacuole | 21.74 | 19.4 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G184000.1 | EnsemblPlantsGene:TraesCS4A01G184000 | GO:GO:0008150 | GO:GO:0019915 | InterPro:Seipin | PANTHER:PTHR21212 |
| PANTHER:PTHR21212:SF0 | PFAM:PF06775 | SEG:seg | TMHMM:TMhelix | MapMan:5.9.1 | : |
Description
No Description!
Coordinates
chr4A:-:462210624..462211955
Molecular Weight (calculated)
44661.8 Da
IEP (calculated)
9.508
GRAVY (calculated)
0.093
Length
414 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPGPHHPST YNHHHHYPFL PAAGPPTAAG DTLLFLLAVP AGWLIRLVAF LGERVISAVL TLVVLPGATL VGELRAVPAA AASLARRAAV GVLAAAFTFA
101: ALAVALVASL LLGFVLIRHW VEDPVTVHQP LYFDYTEPQP SAAVALCPPA GHSVRVSISL LLPDSDHNRQ IGVFQIKTEA ITPSGSTIAS ATQPYMLRYK
201: SAPVRLAQSA LTIVPLALGM RSESQSATLK LLQYWEGHGR HKRTRLIRVS LQPRAMTVHL PQVYRAEITV QTALPWFKAV ARSLKWTMCV WLSFWVYVIL
301: SLLAVRWVWP LALSAWDSHR GLSDHQVNGK TIAANLGGGD TGQSSHEGSS SGGAVKWRDR RGRRKAQKTR HGGMVELKLD EGSSSSSAVA ETDEVVDDDH
401: GESPAAPLSE SESC
101: ALAVALVASL LLGFVLIRHW VEDPVTVHQP LYFDYTEPQP SAAVALCPPA GHSVRVSISL LLPDSDHNRQ IGVFQIKTEA ITPSGSTIAS ATQPYMLRYK
201: SAPVRLAQSA LTIVPLALGM RSESQSATLK LLQYWEGHGR HKRTRLIRVS LQPRAMTVHL PQVYRAEITV QTALPWFKAV ARSLKWTMCV WLSFWVYVIL
301: SLLAVRWVWP LALSAWDSHR GLSDHQVNGK TIAANLGGGD TGQSSHEGSS SGGAVKWRDR RGRRKAQKTR HGGMVELKLD EGSSSSSAVA ETDEVVDDDH
401: GESPAAPLSE SESC
001: MRILQNKTMK EQDNQLKIPE PLRADWFMVL VTIQADLIYN ALVVLSSPFF LLYRSYRRAV VTVSAAEKAV KRAPAQIAGG AGRVVRRTWF GILGACHVSM
101: VMVLALILAV VIGVGIVSLY VEKPVVVRDR LFFDYTEENP SAVFSFDKKK RSFSVPVGHS VHVSLVLWMP ESEINRRIGV FQLKVELLSL KGETIARSSQ
201: PCMLRFRSKP IRLARTFVMS VPLIAGIANE AQTMRIDALK HQEKMPRTKA VRATLIPRAQ TRTLPQLYEA EIVINSKPPW IKRMAYNWKW TLCVWTSMYL
301: YVAILTALLW CFRPVLFPYT SSRTISESEN LEIEVVEEEQ EQVMERRRRE RRNQPRRRNF ATTQKSYT
101: VMVLALILAV VIGVGIVSLY VEKPVVVRDR LFFDYTEENP SAVFSFDKKK RSFSVPVGHS VHVSLVLWMP ESEINRRIGV FQLKVELLSL KGETIARSSQ
201: PCMLRFRSKP IRLARTFVMS VPLIAGIANE AQTMRIDALK HQEKMPRTKA VRATLIPRAQ TRTLPQLYEA EIVINSKPPW IKRMAYNWKW TLCVWTSMYL
301: YVAILTALLW CFRPVLFPYT SSRTISESEN LEIEVVEEEQ EQVMERRRRE RRNQPRRRNF ATTQKSYT
Arabidopsis Description
SEI1Seipin-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFD9]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.