Factsheet for Os12t0148700-01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, plasma membrane

Predictor Summary:

nucleus 1
peroxisome 1
plastid 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome, plasma membrane, plastid
Any Predictor:	nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	peroxisome
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU82879	Sorghum	plasma membrane	57.46	57.04
HORVU4Hr1G025360.2	Barley	peroxisome, plasma membrane, plastid	55.26	54.59
TraesCS4D01G129400.1	Wheat	plasma membrane	54.03	53.38
TraesCS4A01G184000.1	Wheat	plasma membrane	53.55	52.9
TraesCS4B01G134700.1	Wheat	plasma membrane	52.57	52.7
Bra006356.1-P	Field mustard	extracellular	22.98	34.56
VIT_04s0023g00480.t01	Wine grape	plasma membrane, plastid, vacuole	21.27	34.25
Bra023566.1-P	Field mustard	plasma membrane	27.87	32.02
GSMUA_Achr3P02430_001	Banana	cytosol, peroxisome, vacuole	32.52	31.74
CDX85507	Canola	plasma membrane	27.63	31.56
CDY38111	Canola	plasma membrane	27.14	31.01
KRH40303	Soybean	endoplasmic reticulum	30.56	30.71
CDX70695	Canola	plasma membrane	26.65	30.45
AT5G16460.1	Thale cress	plasma membrane	27.38	30.43
CDX78692	Canola	cytosol, endoplasmic reticulum, plasma membrane	26.16	30.06
Solyc04g056380.2.1	Tomato	golgi, nucleus, plasma membrane	28.61	28.4
KRH00920	Soybean	endoplasmic reticulum	30.56	28.09
PGSC0003DMT400018729	Potato	golgi, peroxisome, plasma membrane	27.63	26.9
Os09t0534000-01	Rice	cytosol, nucleus, plasma membrane, plastid	24.69	22.1

Protein Annotations

EMBL:AK107332	EnsemblPlants:Os12t0148700-01	EnsemblPlantsGene:Os12g0148700	EntrezGene:4351504	GO:GO:0005575	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0019915	InterPro:Seipin	PANTHER:PTHR21212	PANTHER:PTHR21212:SF0
PFAM:PF06775	ProteinID:ABA95801.2	ProteinID:BAF29177.1	ProteinID:BAT15899.1	RefSeq:XP_015619037.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI0000D89C31	UniProt:Q2QXP5	MapMan:5.9.1	:	:

Description

Adipose-regulatory protein, Seipin domain containing protein. (Os12t0148700-01)

Coordinates

chr12:-:2395992..2397707

Molecular Weight (calculated)

44363.9 Da

IEP (calculated)

9.509

GRAVY (calculated)

0.190

Length

409 amino acids

Sequence
(BLAST)

001: MNSTSKYHRD YPFLPAAASS SDGDGDGDGF YIGEPRNPAA GADSTDVFLF LAVPAGWLVR LAAFVGELVA SAILGLVYPV AALIGWLRAV PAAVASLLRR
101: AATGLLAAAC TFAVLAAAFV VSLVLGFALV RHWVAEPVTA RHPLYFDYTE AQPSAAVALG GGAAAAVPAG HAVRVSMALL LPDSYHNRHI GVFQIKSEAI
201: SASGITIAST TQPYLIKYKS SPVRLIQTAL LCVPLTMGIR SESQDANLKL LHYREGHGRH KRTVLIRVML QPRAMTVHLP QVYQAEIVVQ TTLPWTKELV
301: RALKWTLCVW VSLCVYVFIL VLAMICWSRS PSAFSSRDRR LYDHQVIENS GMDMGDSGER SDKELYGGVG VKWKQRIRKR KAQHGTLQGD RMELKFTEGS
401: TSGVAMDGE

Best Arabidopsis Sequence Match ( AT5G16460.1 )
(BLAST)

001: MRILQNKTMK EQDNQLKIPE PLRADWFMVL VTIQADLIYN ALVVLSSPFF LLYRSYRRAV VTVSAAEKAV KRAPAQIAGG AGRVVRRTWF GILGACHVSM
101: VMVLALILAV VIGVGIVSLY VEKPVVVRDR LFFDYTEENP SAVFSFDKKK RSFSVPVGHS VHVSLVLWMP ESEINRRIGV FQLKVELLSL KGETIARSSQ
201: PCMLRFRSKP IRLARTFVMS VPLIAGIANE AQTMRIDALK HQEKMPRTKA VRATLIPRAQ TRTLPQLYEA EIVINSKPPW IKRMAYNWKW TLCVWTSMYL
301: YVAILTALLW CFRPVLFPYT SSRTISESEN LEIEVVEEEQ EQVMERRRRE RRNQPRRRNF ATTQKSYT

Arabidopsis Description

SEI1Seipin-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFD9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.