Subcellular Localization
min:
: max
Winner_takes_all: cytosol, plasma membrane, golgi, mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 2
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_06s0080g00970.t01 | |
| VIT_07s0031g00460.t01 | |
| VIT_10s0003g01830.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G54020.1 | VIT_07s0031g00460.t01 | AT2G23420.1 | 21798944 |
| AT3G54020.1 | VIT_10s0003g01830.t01 | AT4G19030.1 | 21798944 |
| AT3G54020.1 | VIT_06s0080g00970.t01 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG88789 | Soybean | cytosol, golgi, mitochondrion, plasma membrane | 85.76 | 86.31 |
| KRH75771 | Soybean | cytosol, golgi, mitochondrion, peroxisome | 85.13 | 85.67 |
| KRH00099 | Soybean | golgi | 83.23 | 83.23 |
| KRH49241 | Soybean | mitochondrion | 82.28 | 82.02 |
| PGSC0003DMT400028621 | Potato | cytosol, golgi, plasma membrane | 79.75 | 81.55 |
| PGSC0003DMT400049398 | Potato | plasma membrane | 73.42 | 81.4 |
| CDX76176 | Canola | mitochondrion | 77.22 | 80.79 |
| CDY13168 | Canola | mitochondrion, plasma membrane | 77.22 | 80.79 |
| Solyc10g084990.1.1 | Tomato | cytosol, golgi, mitochondrion, plasma membrane | 79.43 | 80.45 |
| Bra014848.1-P | Field mustard | mitochondrion | 76.58 | 80.13 |
| VIT_06s0004g05800.t01 | Wine grape | mitochondrion | 73.1 | 79.38 |
| AT3G54020.1 | Thale cress | mitochondrion, plasma membrane | 75.95 | 78.69 |
| Solyc10g086690.1.1 | Tomato | cytosol, golgi, mitochondrion, plasma membrane | 72.78 | 78.5 |
| AT2G37940.1 | Thale cress | mitochondrion, plasma membrane | 75.63 | 78.36 |
| Solyc09g011740.2.1 | Tomato | cytosol, endoplasmic reticulum, plasma membrane | 77.85 | 77.85 |
| CDY18417 | Canola | plasma membrane | 75.0 | 77.7 |
| Bra017148.1-P | Field mustard | plasma membrane | 75.0 | 77.7 |
| CDX91395 | Canola | mitochondrion, plasma membrane | 75.0 | 77.7 |
| CDX93341 | Canola | plasma membrane | 74.68 | 77.38 |
| CDX74925 | Canola | mitochondrion, plasma membrane | 74.68 | 77.12 |
| Bra000029.1-P | Field mustard | plasma membrane | 72.15 | 77.03 |
| CDY07761 | Canola | mitochondrion, plasma membrane | 75.0 | 76.95 |
| CDY14501 | Canola | mitochondrion, plasma membrane | 75.0 | 76.7 |
| CDY69104 | Canola | mitochondrion, plasma membrane | 75.0 | 76.7 |
| PGSC0003DMT400052472 | Potato | plasma membrane | 76.58 | 76.58 |
| Bra005148.1-P | Field mustard | mitochondrion, plasma membrane | 73.42 | 76.57 |
| GSMUA_Achr6P23620_001 | Banana | golgi | 75.0 | 75.72 |
| Zm00001d046198_P001 | Maize | endoplasmic reticulum, plasma membrane | 11.39 | 75.0 |
| GSMUA_Achr3P17660_001 | Banana | cytosol, golgi, mitochondrion, plasma membrane | 74.37 | 74.84 |
| GSMUA_AchrUn_... | Banana | cytosol, golgi, mitochondrion, plasma membrane | 74.68 | 74.68 |
| GSMUA_Achr10P... | Banana | cytosol, golgi, mitochondrion, plasma membrane | 73.42 | 73.89 |
| Os05t0287800-01 | Rice | mitochondrion | 71.2 | 71.89 |
| KXG23698 | Sorghum | mitochondrion | 70.57 | 71.25 |
| Zm00001d041608_P001 | Maize | mitochondrion, plasma membrane | 70.25 | 70.93 |
| Zm00001d030613_P003 | Maize | mitochondrion, plasma membrane | 69.62 | 70.29 |
| HORVU1Hr1G073060.1 | Barley | plasma membrane | 70.89 | 70.22 |
| HORVU1Hr1G073040.1 | Barley | plasma membrane | 70.89 | 70.22 |
| Zm00001d038343_P001 | Maize | plasma membrane | 70.89 | 70.22 |
| EES01758 | Sorghum | mitochondrion | 71.84 | 70.06 |
| Os01t0850100-01 | Rice | cytosol, golgi, mitochondrion, plasma membrane | 71.84 | 69.63 |
| EES19630 | Sorghum | cytosol, golgi, plasma membrane | 70.25 | 69.59 |
| TraesCS1B01G289300.1 | Wheat | plasma membrane | 70.89 | 69.57 |
| Zm00001d012380_P002 | Maize | plasma membrane | 71.2 | 69.44 |
| TraesCS3A01G365000.1 | Wheat | plasma membrane | 71.2 | 69.02 |
| TraesCS1D01G279500.1 | Wheat | plasma membrane | 70.25 | 68.94 |
| TraesCS3B01G396900.1 | Wheat | golgi | 70.89 | 68.71 |
| Os05t0452900-02 | Rice | cytosol, golgi, mitochondrion, plasma membrane | 70.57 | 68.62 |
| TraesCS3D01G358200.1 | Wheat | golgi | 70.57 | 68.4 |
| TraesCS1A01G280400.1 | Wheat | plasma membrane | 69.3 | 68.22 |
| Zm00001d042851_P003 | Maize | golgi, plasma membrane, plastid | 70.25 | 62.54 |
| CDY18431 | Canola | plasma membrane | 44.94 | 61.21 |
| HORVU3Hr1G085630.8 | Barley | plastid | 64.87 | 58.24 |
Protein Annotations
| EntrezGene:100266611 | wikigene:100266611 | MapMan:5.4.13.1 | ProteinID:CBI30459 | ProteinID:CBI30459.3 | UniProt:D7THE3 |
| EMBL:FN595991 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005802 | GO:GO:0006629 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016740 | GO:GO:0030148 |
| GO:GO:0045140 | EntrezGene:LOC100266611 | wikigene:LOC100266611 | PFAM:PF14360 | PANTHER:PTHR21290 | PANTHER:PTHR21290:SF33 |
| InterPro:Sphingomyelin_synth-like_dom | TIGR:TC64550 | TMHMM:TMhelix | UniParc:UPI0001BE357D | ArrayExpress:VIT_08s0007g01510 | EnsemblPlantsGene:VIT_08s0007g01510 |
| EnsemblPlants:VIT_08s0007g01510.t01 | unigene:Vvi.1383 | RefSeq:XP_002276211 | RefSeq:XP_002276211.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr8:+:15615746..15620729
Molecular Weight (calculated)
35993.8 Da
IEP (calculated)
9.717
GRAVY (calculated)
0.061
Length
316 amino acids
Sequence
(BLAST)
(BLAST)
001: MTLYIGREAS KKLWKRVCAE TTTELNLLLE NWKYLLAGLI FQYIHGLAAR GVHYLHRPGP TLQDVGFFLL PELGPDKAYI SETVFTFVFL SFVLWTFHPF
101: IFKAKKIYTV LLWCRVLAFL VASQSLRIIT FYSTQLPGPN YHCREGSKLA RLPRPDSAFE VLLINFPRGV IYGCGDLIFS SHMIFTLVFV LTYQKYGTRR
201: CIKQFAWLIA VAQSFLIVAS RKHYTVDVVV AWYTVNLVVF FIDKKLPELP DRSNGSASLL LPLSTKDKDS KTKEENHKLL NGNSGDPADW RQRTQVNGKT
301: LEDGNTVHAE TTTNGA
101: IFKAKKIYTV LLWCRVLAFL VASQSLRIIT FYSTQLPGPN YHCREGSKLA RLPRPDSAFE VLLINFPRGV IYGCGDLIFS SHMIFTLVFV LTYQKYGTRR
201: CIKQFAWLIA VAQSFLIVAS RKHYTVDVVV AWYTVNLVVF FIDKKLPELP DRSNGSASLL LPLSTKDKDS KTKEENHKLL NGNSGDPADW RQRTQVNGKT
301: LEDGNTVHAE TTTNGA
001: MTLYIRREAS KLWRRFCSEI TTEIGLLAEN WKYLLAGLLC QYIHGLAARG VHYIHRPGPT LQDSGFFVLP ELGQDKGFIS ETVFTCVFLS FFLWTFHPFI
101: VKSKKIYTVL IWCRVLAFLV ACQFLRVITF YSTQLPGPNY HCREGSELAR LPRPHNVLEV LLLNFPRGVI YGCGDLIFSS HMIFTLVFVR TYQKYGSKRF
201: IKLLGWVIAI LQSLLIIASR KHYTVDVVVA WYTVNLVVFF LDKKLPELPD RTTALLPVIS KDRTKEESHK LLNGNGVDPA DRRPRAQVNG KDSNGGHTDN
301: ATNGT
101: VKSKKIYTVL IWCRVLAFLV ACQFLRVITF YSTQLPGPNY HCREGSELAR LPRPHNVLEV LLLNFPRGVI YGCGDLIFSS HMIFTLVFVR TYQKYGSKRF
201: IKLLGWVIAI LQSLLIIASR KHYTVDVVVA WYTVNLVVFF LDKKLPELPD RTTALLPVIS KDRTKEESHK LLNGNGVDPA DRRPRAQVNG KDSNGGHTDN
301: ATNGT
Arabidopsis Description
IPCS1Phosphatidylinositol:ceramide inositolphosphotransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M325]
SUBAcon: [plasma membrane,mitochondrion]
SUBAcon: [plasma membrane,mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.