Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G279500.1 | Wheat | plasma membrane | 97.51 | 97.2 |
| HORVU1Hr1G073060.1 | Barley | plasma membrane | 95.64 | 96.24 |
| HORVU1Hr1G073040.1 | Barley | plasma membrane | 95.64 | 96.24 |
| TraesCS1B01G289300.1 | Wheat | plasma membrane | 96.26 | 95.96 |
| Os05t0452900-02 | Rice | cytosol, golgi, mitochondrion, plasma membrane | 84.74 | 83.69 |
| EES19630 | Sorghum | cytosol, golgi, plasma membrane | 82.24 | 82.76 |
| Zm00001d038343_P001 | Maize | plasma membrane | 81.62 | 82.13 |
| TraesCS3A01G365000.1 | Wheat | plasma membrane | 79.75 | 78.53 |
| GSMUA_Achr10P... | Banana | cytosol, golgi, mitochondrion, plasma membrane | 71.03 | 72.61 |
| GSMUA_Achr3P17660_001 | Banana | cytosol, golgi, mitochondrion, plasma membrane | 70.72 | 72.29 |
| KRH00099 | Soybean | golgi | 70.72 | 71.84 |
| AT3G54020.1 | Thale cress | mitochondrion, plasma membrane | 67.91 | 71.48 |
| GSMUA_Achr6P23620_001 | Banana | golgi | 69.16 | 70.93 |
| CDY13168 | Canola | mitochondrion, plasma membrane | 66.67 | 70.86 |
| CDX76176 | Canola | mitochondrion | 66.67 | 70.86 |
| GSMUA_AchrUn_... | Banana | cytosol, golgi, mitochondrion, plasma membrane | 69.47 | 70.57 |
| VIT_06s0004g05800.t01 | Wine grape | mitochondrion | 63.55 | 70.1 |
| KRG88789 | Soybean | cytosol, golgi, mitochondrion, plasma membrane | 68.54 | 70.06 |
| Bra014848.1-P | Field mustard | mitochondrion | 65.73 | 69.87 |
| KRH49241 | Soybean | mitochondrion | 68.54 | 69.4 |
| VIT_08s0007g01510.t01 | Wine grape | cytosol, golgi, mitochondrion, plasma membrane | 68.22 | 69.3 |
| KRH75771 | Soybean | cytosol, golgi, mitochondrion, peroxisome | 67.6 | 69.11 |
| PGSC0003DMT400049398 | Potato | plasma membrane | 61.06 | 68.77 |
| CDX91395 | Canola | mitochondrion, plasma membrane | 64.49 | 67.87 |
| CDY18417 | Canola | plasma membrane | 63.86 | 67.21 |
| Bra017148.1-P | Field mustard | plasma membrane | 63.86 | 67.21 |
| CDX93341 | Canola | plasma membrane | 63.86 | 67.21 |
| Solyc10g086690.1.1 | Tomato | cytosol, golgi, mitochondrion, plasma membrane | 61.06 | 66.89 |
| AT2G37940.1 | Thale cress | mitochondrion, plasma membrane | 63.24 | 66.56 |
| Bra000029.1-P | Field mustard | plasma membrane | 61.37 | 66.55 |
| PGSC0003DMT400028621 | Potato | cytosol, golgi, plasma membrane | 63.86 | 66.34 |
| CDY69104 | Canola | mitochondrion, plasma membrane | 63.86 | 66.34 |
| CDY14501 | Canola | mitochondrion, plasma membrane | 63.86 | 66.34 |
| CDY07761 | Canola | mitochondrion, plasma membrane | 63.55 | 66.23 |
| CDX74925 | Canola | mitochondrion, plasma membrane | 62.93 | 66.01 |
| Bra005148.1-P | Field mustard | mitochondrion, plasma membrane | 61.99 | 65.68 |
| AT2G29525.1 | Thale cress | plasma membrane | 58.57 | 65.05 |
| Solyc10g084990.1.1 | Tomato | cytosol, golgi, mitochondrion, plasma membrane | 62.62 | 64.42 |
| Solyc09g011740.2.1 | Tomato | cytosol, endoplasmic reticulum, plasma membrane | 63.24 | 64.24 |
| PGSC0003DMT400052472 | Potato | plasma membrane | 62.31 | 63.29 |
| CDY18431 | Canola | plasma membrane | 39.88 | 55.17 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G280400.1 | EnsemblPlantsGene:TraesCS1A01G280400 | InterPro:Sphingomyelin_synth-like_dom | PANTHER:PTHR21290 | PANTHER:PTHR21290:SF46 | PFAM:PF14360 |
| SEG:seg | TMHMM:TMhelix | MapMan:5.4.13.1 | : | : | : |
Description
No Description!
Coordinates
chr1A:-:477735712..477739169
Molecular Weight (calculated)
36986.3 Da
IEP (calculated)
9.665
GRAVY (calculated)
0.001
Length
321 amino acids
Sequence
(BLAST)
(BLAST)
001: MTIYLAREAS KVWRKVCAET TTELPMLREK WPLLLAGIVF QYIHGLAARG VHYLHRPGPL LQDLGFMALP ELGQDKNYLS ECTFVFIFFS FFLWTFHPFI
101: YHSKRFYTIL IWRRVLAFLV ASQVLRIVTF YSTQLPGPNY HCREGSSMAT LPPPNNVLEV LLINFPRGVN LGCGDLIFSS HMIFTLVFVR TYHKYGSKRF
201: IKLLAWMMAI IQSLLIIAAR KHYTVDVVVA WYAVNLVVFF VDTKLPEMPD RTNGSPLIPL SNKDKDGRPK DEKDVRLKDE FHKLLNGNHG DATDRRQRVQ
301: MNGRHAEEDM SMLSDATPNG T
101: YHSKRFYTIL IWRRVLAFLV ASQVLRIVTF YSTQLPGPNY HCREGSSMAT LPPPNNVLEV LLINFPRGVN LGCGDLIFSS HMIFTLVFVR TYHKYGSKRF
201: IKLLAWMMAI IQSLLIIAAR KHYTVDVVVA WYAVNLVVFF VDTKLPEMPD RTNGSPLIPL SNKDKDGRPK DEKDVRLKDE FHKLLNGNHG DATDRRQRVQ
301: MNGRHAEEDM SMLSDATPNG T
001: MPVYVDREAP KLWRRIYSEA TLEASLLAEK WKLVLAGLVF QYIHGLAAHG VHYLHRPGPT LQDAGFFILP ALGQDKAFFS ETVFVTIFGS FILWTFHPFV
101: SHSKKICTVL IWCRVFVYLA ASQSLRIITF FATQLPGPNY HCREGSKLAK IPPPKNVLEV LLINFPDGVI YGCGDLIFSS HTIFTLVFVR TYQRYGTRRW
201: IKHLAWLMAV IQSILIIASR KHYTVDIVVA WYTVNLVMFY VDSKLPEMAE RSSGPSPTPL LPLSTKDSKN KSKEDHQRLL NENNVADDH
101: SHSKKICTVL IWCRVFVYLA ASQSLRIITF FATQLPGPNY HCREGSKLAK IPPPKNVLEV LLINFPDGVI YGCGDLIFSS HTIFTLVFVR TYQRYGTRRW
201: IKHLAWLMAV IQSILIIASR KHYTVDIVVA WYTVNLVMFY VDSKLPEMAE RSSGPSPTPL LPLSTKDSKN KSKEDHQRLL NENNVADDH
Arabidopsis Description
IPCS3Phosphatidylinositol:ceramide inositolphosphotransferase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q56Y01]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.