Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 2
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g084990.1.1 | Tomato | cytosol, golgi, mitochondrion, plasma membrane | 96.76 | 95.83 |
| PGSC0003DMT400049398 | Potato | plasma membrane | 78.96 | 85.61 |
| PGSC0003DMT400052472 | Potato | plasma membrane | 83.5 | 81.65 |
| KRG88789 | Soybean | cytosol, golgi, mitochondrion, plasma membrane | 81.88 | 80.57 |
| KRH75771 | Soybean | cytosol, golgi, mitochondrion, peroxisome | 81.88 | 80.57 |
| VIT_08s0007g01510.t01 | Wine grape | cytosol, golgi, mitochondrion, plasma membrane | 81.55 | 79.75 |
| CDX76176 | Canola | mitochondrion | 76.05 | 77.81 |
| CDY13168 | Canola | mitochondrion, plasma membrane | 76.05 | 77.81 |
| KRH00099 | Soybean | golgi | 78.96 | 77.22 |
| Bra014848.1-P | Field mustard | mitochondrion | 75.4 | 77.15 |
| AT3G54020.1 | Thale cress | mitochondrion, plasma membrane | 76.05 | 77.05 |
| KRH49241 | Soybean | mitochondrion | 78.64 | 76.66 |
| AT2G37940.1 | Thale cress | mitochondrion, plasma membrane | 74.43 | 75.41 |
| CDX91395 | Canola | mitochondrion, plasma membrane | 73.46 | 74.43 |
| Bra000029.1-P | Field mustard | plasma membrane | 71.2 | 74.32 |
| CDX74925 | Canola | mitochondrion, plasma membrane | 73.46 | 74.18 |
| CDY14501 | Canola | mitochondrion, plasma membrane | 73.79 | 73.79 |
| CDY69104 | Canola | mitochondrion, plasma membrane | 73.79 | 73.79 |
| CDY18417 | Canola | plasma membrane | 72.82 | 73.77 |
| Bra017148.1-P | Field mustard | plasma membrane | 72.82 | 73.77 |
| CDY07761 | Canola | mitochondrion, plasma membrane | 73.46 | 73.7 |
| Bra005148.1-P | Field mustard | mitochondrion, plasma membrane | 72.17 | 73.6 |
| CDX93341 | Canola | plasma membrane | 72.49 | 73.44 |
| GSMUA_Achr6P23620_001 | Banana | golgi | 69.9 | 69.01 |
| Zm00001d046198_P001 | Maize | endoplasmic reticulum, plasma membrane | 10.68 | 68.75 |
| Zm00001d038343_P001 | Maize | plasma membrane | 70.55 | 68.34 |
| GSMUA_AchrUn_... | Banana | cytosol, golgi, mitochondrion, plasma membrane | 69.58 | 68.04 |
| EES19630 | Sorghum | cytosol, golgi, plasma membrane | 69.26 | 67.08 |
| GSMUA_Achr10P... | Banana | cytosol, golgi, mitochondrion, plasma membrane | 67.96 | 66.88 |
| TraesCS3B01G396900.1 | Wheat | golgi | 70.55 | 66.87 |
| Os05t0287800-01 | Rice | mitochondrion | 67.64 | 66.77 |
| EES01758 | Sorghum | mitochondrion | 69.9 | 66.67 |
| TraesCS3A01G365000.1 | Wheat | plasma membrane | 70.23 | 66.56 |
| TraesCS3D01G358200.1 | Wheat | golgi | 69.9 | 66.26 |
| Os01t0850100-01 | Rice | cytosol, golgi, mitochondrion, plasma membrane | 69.58 | 65.95 |
| GSMUA_Achr3P17660_001 | Banana | cytosol, golgi, mitochondrion, plasma membrane | 66.67 | 65.61 |
| HORVU1Hr1G073060.1 | Barley | plasma membrane | 67.31 | 65.2 |
| HORVU1Hr1G073040.1 | Barley | plasma membrane | 67.31 | 65.2 |
| KXG23698 | Sorghum | mitochondrion | 66.02 | 65.18 |
| Zm00001d012380_P002 | Maize | plasma membrane | 67.96 | 64.81 |
| Os05t0452900-02 | Rice | cytosol, golgi, mitochondrion, plasma membrane | 67.96 | 64.62 |
| Zm00001d041608_P001 | Maize | mitochondrion, plasma membrane | 65.37 | 64.54 |
| Zm00001d030613_P003 | Maize | mitochondrion, plasma membrane | 65.37 | 64.54 |
| TraesCS1D01G279500.1 | Wheat | plasma membrane | 66.99 | 64.29 |
| TraesCS1B01G289300.1 | Wheat | plasma membrane | 66.67 | 63.98 |
| TraesCS1A01G280400.1 | Wheat | plasma membrane | 66.34 | 63.86 |
| Zm00001d042851_P003 | Maize | golgi, plasma membrane, plastid | 69.26 | 60.28 |
| CDY18431 | Canola | plasma membrane | 44.34 | 59.05 |
| HORVU3Hr1G085630.8 | Barley | plastid | 64.08 | 56.25 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400028621 | EnsemblPlantsGene:PGSC0003DMG400011014 | EntrezGene:102586322 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Sphingomyelin_synth-like_dom | PANTHER:PTHR21290 | PANTHER:PTHR21290:SF33 | PFAM:PF14360 | PGSC:PGSC0003DMG400011014 | RefSeq:XP_006339003.1 |
| TMHMM:TMhelix | UniParc:UPI000295F465 | UniProt:M1ARE3 | MapMan:5.4.13.1 | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400011014]
Coordinates
chr10:-:54100566..54104867
Molecular Weight (calculated)
35330.2 Da
IEP (calculated)
8.911
GRAVY (calculated)
0.129
Length
309 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFYIGHEAP KLWRRICAET TTEINLLAEN WKYILGGLIF QYIHGLGARG VHYLHRPGPT LQDAGYFLLP ELGSDNAYIS ETVFTTIFLS FVLWTFHPFI
101: FKTKKIYTVL IWCRVLAFLV ACQFLRMMTF YSTQLPGPNY HCREGSKLAT LPRPDSVLEV LLLNFPRGLL YGCGDLIFSS HMIFSLVFVR TYQKYGTRRF
201: IKQCAWLAVI AQSFLIVASR KHYTVDVVVA WYTVNLVVFF VDKKLPELPD RTSAASLLPV SKDSKTKEEN HKLLNGNADP EDWRPRTQIN GMIMEDGNAV
301: HVEAAMNGV
101: FKTKKIYTVL IWCRVLAFLV ACQFLRMMTF YSTQLPGPNY HCREGSKLAT LPRPDSVLEV LLLNFPRGLL YGCGDLIFSS HMIFSLVFVR TYQKYGTRRF
201: IKQCAWLAVI AQSFLIVASR KHYTVDVVVA WYTVNLVVFF VDKKLPELPD RTSAASLLPV SKDSKTKEEN HKLLNGNADP EDWRPRTQIN GMIMEDGNAV
301: HVEAAMNGV
001: MTLYIRREAS KLWRRFCSEI TTEIGLLAEN WKYLLAGLLC QYIHGLAARG VHYIHRPGPT LQDSGFFVLP ELGQDKGFIS ETVFTCVFLS FFLWTFHPFI
101: VKSKKIYTVL IWCRVLAFLV ACQFLRVITF YSTQLPGPNY HCREGSELAR LPRPHNVLEV LLLNFPRGVI YGCGDLIFSS HMIFTLVFVR TYQKYGSKRF
201: IKLLGWVIAI LQSLLIIASR KHYTVDVVVA WYTVNLVVFF LDKKLPELPD RTTALLPVIS KDRTKEESHK LLNGNGVDPA DRRPRAQVNG KDSNGGHTDN
301: ATNGT
101: VKSKKIYTVL IWCRVLAFLV ACQFLRVITF YSTQLPGPNY HCREGSELAR LPRPHNVLEV LLLNFPRGVI YGCGDLIFSS HMIFTLVFVR TYQKYGSKRF
201: IKLLGWVIAI LQSLLIIASR KHYTVDVVVA WYTVNLVVFF LDKKLPELPD RTTALLPVIS KDRTKEESHK LLNGNGVDPA DRRPRAQVNG KDSNGGHTDN
301: ATNGT
Arabidopsis Description
IPCS1Phosphatidylinositol:ceramide inositolphosphotransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M325]
SUBAcon: [mitochondrion,plasma membrane]
SUBAcon: [mitochondrion,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.