Factsheet for TraesCS3B01G396900.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

golgi 3
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	endoplasmic reticulum, golgi, mitochondrion
MultiLoc:	golgi
Predotar:	mitochondrion
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G302400.1
TraesCS2B01G318300.2
TraesCS2D01G301100.1
TraesCS4A01G354500.1
TraesCS5B01G517900.3
TraesCS5D01G517600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54020.1	TraesCS2A01G302400.1	AT2G23420.1	21798944
AT3G54020.1	TraesCS2B01G318300.2	AT2G23420.1	21798944
AT3G54020.1	TraesCS2D01G301100.1	AT2G23420.1	21798944
AT3G54020.1	TraesCS4A01G354500.1	AT2G23420.1	21798944
AT3G54020.1	TraesCS5B01G517900.3	AT2G23420.1	21798944
AT3G54020.1	TraesCS5D01G517600.1	AT2G23420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G365000.1	Wheat	plasma membrane	98.77	98.77
TraesCS3D01G358200.1	Wheat	golgi	98.47	98.47
Os01t0850100-01	Rice	cytosol, golgi, mitochondrion, plasma membrane	88.65	88.65
EES01758	Sorghum	mitochondrion	85.28	85.8
Zm00001d012380_P002	Maize	plasma membrane	83.74	84.26
HORVU3Hr1G085630.8	Barley	plastid	87.12	80.68
TraesCS1B01G289300.1	Wheat	plasma membrane	78.53	79.5
Zm00001d042851_P003	Maize	golgi, plasma membrane, plastid	84.66	77.75
GSMUA_Achr10P...	Banana	cytosol, golgi, mitochondrion, plasma membrane	73.01	75.8
GSMUA_Achr3P17660_001	Banana	cytosol, golgi, mitochondrion, plasma membrane	72.39	75.16
GSMUA_Achr6P23620_001	Banana	golgi	72.09	75.08
GSMUA_AchrUn_...	Banana	cytosol, golgi, mitochondrion, plasma membrane	72.09	74.37
VIT_06s0004g05800.t01	Wine grape	mitochondrion	65.95	73.88
AT3G54020.1	Thale cress	mitochondrion, plasma membrane	69.02	73.77
CDY13168	Canola	mitochondrion, plasma membrane	67.79	73.18
CDX76176	Canola	mitochondrion	67.79	73.18
PGSC0003DMT400049398	Potato	plasma membrane	63.8	72.98
Bra014848.1-P	Field mustard	mitochondrion	66.87	72.19
KRH00099	Soybean	golgi	69.63	71.84
KRG88789	Soybean	cytosol, golgi, mitochondrion, plasma membrane	68.71	71.34
VIT_08s0007g01510.t01	Wine grape	cytosol, golgi, mitochondrion, plasma membrane	68.71	70.89
Bra000029.1-P	Field mustard	plasma membrane	64.11	70.61
PGSC0003DMT400028621	Potato	cytosol, golgi, plasma membrane	66.87	70.55
KRH75771	Soybean	cytosol, golgi, mitochondrion, peroxisome	67.79	70.38
Solyc10g086690.1.1	Tomato	cytosol, golgi, mitochondrion, plasma membrane	63.19	70.31
AT2G29525.1	Thale cress	plasma membrane	62.27	70.24
Bra017148.1-P	Field mustard	plasma membrane	65.64	70.16
CDX91395	Canola	mitochondrion, plasma membrane	65.64	70.16
CDY18417	Canola	plasma membrane	65.64	70.16
AT2G37940.1	Thale cress	mitochondrion, plasma membrane	65.34	69.84
CDX93341	Canola	plasma membrane	65.34	69.84
CDY14501	Canola	mitochondrion, plasma membrane	65.95	69.58
CDY69104	Canola	mitochondrion, plasma membrane	65.95	69.58
Solyc10g084990.1.1	Tomato	cytosol, golgi, mitochondrion, plasma membrane	66.26	69.23
KRH49241	Soybean	mitochondrion	67.18	69.09
CDY07761	Canola	mitochondrion, plasma membrane	65.03	68.83
Solyc09g011740.2.1	Tomato	cytosol, endoplasmic reticulum, plasma membrane	66.56	68.67
Bra005148.1-P	Field mustard	mitochondrion, plasma membrane	63.8	68.65
CDX74925	Canola	mitochondrion, plasma membrane	64.42	68.63
PGSC0003DMT400052472	Potato	plasma membrane	65.64	67.72
CDY18431	Canola	plasma membrane	40.18	56.47

Protein Annotations

EnsemblPlants:TraesCS3B01G396900.1	EnsemblPlantsGene:TraesCS3B01G396900	InterPro:Sphingomyelin_synth-like_dom	PANTHER:PTHR21290	PANTHER:PTHR21290:SF46	PFAM:PF14360
TMHMM:TMhelix	MapMan:5.4.13.1	:	:	:	:

Description

No Description!

Coordinates

chr3B:+:627199560..627203279

Molecular Weight (calculated)

37613.2 Da

IEP (calculated)

9.824

GRAVY (calculated)

-0.006

Length

326 amino acids

Sequence
(BLAST)

001: MAIYIAREAT KLWRKVCAET SVELQLLFEK WHLLLAGIVF QYIHGLAARG VHYLHRPGPI LQDMGFMALP ELGQDKGYLS ETVFTSIFLS FLLWSFHPFV
101: YHSKRFYTVL LWRRVLAFLV ASQFLRIITF YSTQLPGPNY HCREGSKLAT LPPPKNVLEV LLINFPRGVL FGCGDLIFSS HMIFTLVFVR TYHKYGSKRL
201: IKLFAWLMAI IQSLLIIASR KHYTVDVVVA WYTVNLVVFF VDKNLPEMPD RTSGLSLLPV STKDKSDRMK EELHKPEKDN KMKDEHHKLL NGNNVDSTDR
301: RQWMPMNGKH GEDMNHTLSD AAPNGT

Best Arabidopsis Sequence Match ( AT3G54020.1 )
(BLAST)

001: MTLYIRREAS KLWRRFCSEI TTEIGLLAEN WKYLLAGLLC QYIHGLAARG VHYIHRPGPT LQDSGFFVLP ELGQDKGFIS ETVFTCVFLS FFLWTFHPFI
101: VKSKKIYTVL IWCRVLAFLV ACQFLRVITF YSTQLPGPNY HCREGSELAR LPRPHNVLEV LLLNFPRGVI YGCGDLIFSS HMIFTLVFVR TYQKYGSKRF
201: IKLLGWVIAI LQSLLIIASR KHYTVDVVVA WYTVNLVVFF LDKKLPELPD RTTALLPVIS KDRTKEESHK LLNGNGVDPA DRRPRAQVNG KDSNGGHTDN
301: ATNGT

Arabidopsis Description

IPCS1Phosphatidylinositol:ceramide inositolphosphotransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M325]
SUBAcon: [mitochondrion,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.