CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane

Predictor Summary:

plastid 1
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000029.1-P	Field mustard	plasma membrane	93.83	97.64
CDY14501	Canola	mitochondrion, plasma membrane	97.4	97.09
CDY69104	Canola	mitochondrion, plasma membrane	97.4	97.09
CDY18417	Canola	plasma membrane	94.81	95.74
CDX93341	Canola	plasma membrane	94.48	95.41
CDX91395	Canola	mitochondrion, plasma membrane	94.16	95.08
CDX74925	Canola	mitochondrion, plasma membrane	93.51	94.12
AT2G37940.1	Thale cress	mitochondrion, plasma membrane	93.18	94.1
CDX76176	Canola	mitochondrion	84.74	86.42
CDY13168	Canola	mitochondrion, plasma membrane	84.74	86.42
KRG88789	Soybean	cytosol, golgi, mitochondrion, plasma membrane	77.27	75.8
KRH75771	Soybean	cytosol, golgi, mitochondrion, peroxisome	76.62	75.16
Zm00001d046198_P001	Maize	endoplasmic reticulum, plasma membrane	11.69	75.0
VIT_08s0007g01510.t01	Wine grape	cytosol, golgi, mitochondrion, plasma membrane	76.95	75.0
CDY18431	Canola	plasma membrane	56.17	74.57
KRH00099	Soybean	golgi	75.97	74.05
PGSC0003DMT400049398	Potato	plasma membrane	68.51	74.04
PGSC0003DMT400028621	Potato	cytosol, golgi, plasma membrane	73.7	73.46
KRH49241	Soybean	mitochondrion	75.0	72.87
Solyc09g011740.2.1	Tomato	cytosol, endoplasmic reticulum, plasma membrane	74.35	72.47
PGSC0003DMT400052472	Potato	plasma membrane	74.35	72.47
Solyc10g084990.1.1	Tomato	cytosol, golgi, mitochondrion, plasma membrane	72.73	71.79
Solyc10g086690.1.1	Tomato	cytosol, golgi, mitochondrion, plasma membrane	67.86	71.33
GSMUA_Achr6P23620_001	Banana	golgi	69.48	68.37
GSMUA_Achr3P17660_001	Banana	cytosol, golgi, mitochondrion, plasma membrane	69.16	67.83
GSMUA_AchrUn_...	Banana	cytosol, golgi, mitochondrion, plasma membrane	69.48	67.72
GSMUA_Achr10P...	Banana	cytosol, golgi, mitochondrion, plasma membrane	68.83	67.52
EES19630	Sorghum	cytosol, golgi, plasma membrane	69.81	67.4
Zm00001d038343_P001	Maize	plasma membrane	68.83	66.46
HORVU1Hr1G073040.1	Barley	plasma membrane	68.18	65.83
HORVU1Hr1G073060.1	Barley	plasma membrane	68.18	65.83
Zm00001d041608_P001	Maize	mitochondrion, plasma membrane	66.23	65.18
TraesCS3A01G365000.1	Wheat	plasma membrane	68.83	65.03
TraesCS3B01G396900.1	Wheat	golgi	68.83	65.03
Os01t0850100-01	Rice	cytosol, golgi, mitochondrion, plasma membrane	68.83	65.03
KXG23698	Sorghum	mitochondrion	65.91	64.86
EES01758	Sorghum	mitochondrion	68.18	64.81
Zm00001d012380_P002	Maize	plasma membrane	68.18	64.81
TraesCS3D01G358200.1	Wheat	golgi	68.51	64.72
TraesCS1D01G279500.1	Wheat	plasma membrane	67.53	64.6
Os05t0287800-01	Rice	mitochondrion	65.58	64.54
TraesCS1B01G289300.1	Wheat	plasma membrane	67.21	64.29
Os05t0452900-02	Rice	cytosol, golgi, mitochondrion, plasma membrane	67.53	64.0
Zm00001d030613_P003	Maize	mitochondrion, plasma membrane	64.94	63.9
TraesCS1A01G280400.1	Wheat	plasma membrane	66.23	63.55
Zm00001d042851_P003	Maize	golgi, plasma membrane, plastid	68.18	59.15
HORVU3Hr1G085630.8	Barley	plastid	63.31	55.4

Protein Annotations

EnsemblPlants:CDY07761	EnsemblPlantsGene:GSBRNA2T00124888001	GO:A0A078F308	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:Sphingomyelin_synth-like_dom	PANTHER:PTHR21290	PANTHER:PTHR21290:SF33	PFAM:PF14360	ProteinID:CDY07761	ProteinID:CDY07761.1
TMHMM:TMhelix	UniParc:UPI0004EEC666	UniProt:A0A078F308	MapMan:5.4.13.1	:	:

Description

BnaA03g17500DBnaA03g17500D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F308]

Coordinates

chrLK031980:-:830589..832878

Molecular Weight (calculated)

35559.5 Da

IEP (calculated)

9.475

GRAVY (calculated)

0.118

Length

308 amino acids

Sequence
(BLAST)

001: MTLYIRRESS KLWRRFCSEI TTEIGLLADN WKYLLAGLIC QYIHGLAAKG VHYIHRPGPT LQDLGFFLLP ELGQERSYIS ETVFTSVFLS FFLWTFHPFI
101: LKSKKIYTVL IWCRVLAFLV ACQFLRVITF YSTQLPGPNY HCREGSKVAR LPWPKSPLEI LEINPHGVMY GCGDLIFSSH MIFTLVFVLT YHKYGTKRFI
201: KLFGWLTAFV QSLLIIASRK HYTVDVVVAW YEYTVNLVVF YLDKKLPELP DRTTVLLPVV SKDRTKEENH KLLLNGNGID PADWRPRAQV NGKIDSNGVH
301: FDNSLNGA

Best Arabidopsis Sequence Match ( AT2G37940.2 )
(BLAST)

001: MTLYIRRESS KLWKRFCSEI STEIGLLAEN WKYLLAGLIC QYIHGLAAKG VHYIHRPGPT LQDLGFFLLP ELGQERSYIS ETVFTSVFLS FFLWTFHPFI
101: LKTKKIYTVL IWCRVLAFLV ACQFLRVITF YSTQLPGPNY HCREGSKVSR LPWPKSALEV LEINPHGVMY GCGDLIFSSH MIFTLVFVRT YQKYGTKRFI
201: KLFGWLTAIV QSLLIIASRK HYSVDVVVAW YTVNLVVFCL DKKLPELPDR TAVLLPVISK DRTKEENHKL LNGNGVDPAD WRPRAQVNGK IDSNGVHTDN
301: TMNGA

Arabidopsis Description

IPCS2ERH1 [Source:UniProtKB/TrEMBL;Acc:A0A178VV03]
SUBAcon: [mitochondrion,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.