Factsheet for TraesCS1B01G289300.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	golgi, mitochondrion, plasma membrane
MultiLoc:	golgi
Predotar:	mitochondrion
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G302400.1
TraesCS2B01G318300.2
TraesCS2D01G301100.1
TraesCS4A01G354500.1
TraesCS5B01G517900.3
TraesCS5D01G517600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54020.1	TraesCS2A01G302400.1	AT2G23420.1	21798944
AT3G54020.1	TraesCS2B01G318300.2	AT2G23420.1	21798944
AT3G54020.1	TraesCS2D01G301100.1	AT2G23420.1	21798944
AT3G54020.1	TraesCS4A01G354500.1	AT2G23420.1	21798944
AT3G54020.1	TraesCS5B01G517900.3	AT2G23420.1	21798944
AT3G54020.1	TraesCS5D01G517600.1	AT2G23420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G279500.1	Wheat	plasma membrane	97.83	97.83
TraesCS1A01G280400.1	Wheat	plasma membrane	95.96	96.26
HORVU1Hr1G073060.1	Barley	plasma membrane	94.72	95.61
HORVU1Hr1G073040.1	Barley	plasma membrane	94.72	95.61
Os05t0452900-02	Rice	cytosol, golgi, mitochondrion, plasma membrane	85.4	84.62
Zm00001d038343_P001	Maize	plasma membrane	81.99	82.76
EES19630	Sorghum	cytosol, golgi, plasma membrane	81.99	82.76
TraesCS3B01G396900.1	Wheat	golgi	79.5	78.53
GSMUA_Achr3P17660_001	Banana	cytosol, golgi, mitochondrion, plasma membrane	72.05	73.89
GSMUA_Achr10P...	Banana	cytosol, golgi, mitochondrion, plasma membrane	71.43	73.25
GSMUA_Achr6P23620_001	Banana	golgi	70.81	72.84
AT3G54020.1	Thale cress	mitochondrion, plasma membrane	68.63	72.46
KRH00099	Soybean	golgi	70.81	72.15
CDY13168	Canola	mitochondrion, plasma membrane	67.39	71.85
GSMUA_AchrUn_...	Banana	cytosol, golgi, mitochondrion, plasma membrane	70.5	71.84
KRG88789	Soybean	cytosol, golgi, mitochondrion, plasma membrane	69.88	71.66
CDX76176	Canola	mitochondrion	67.08	71.52
VIT_08s0007g01510.t01	Wine grape	cytosol, golgi, mitochondrion, plasma membrane	69.57	70.89
VIT_06s0004g05800.t01	Wine grape	mitochondrion	63.98	70.79
KRH75771	Soybean	cytosol, golgi, mitochondrion, peroxisome	68.94	70.7
Bra014848.1-P	Field mustard	mitochondrion	66.15	70.53
KRH49241	Soybean	mitochondrion	68.63	69.72
PGSC0003DMT400049398	Potato	plasma membrane	61.49	69.47
CDX91395	Canola	mitochondrion, plasma membrane	65.22	68.85
Bra017148.1-P	Field mustard	plasma membrane	64.6	68.2
CDY18417	Canola	plasma membrane	64.6	68.2
CDX93341	Canola	plasma membrane	64.6	68.2
Solyc10g086690.1.1	Tomato	cytosol, golgi, mitochondrion, plasma membrane	61.49	67.58
Bra000029.1-P	Field mustard	plasma membrane	62.11	67.57
AT2G37940.1	Thale cress	mitochondrion, plasma membrane	63.98	67.54
CDY69104	Canola	mitochondrion, plasma membrane	64.6	67.31
CDY14501	Canola	mitochondrion, plasma membrane	64.6	67.31
CDY07761	Canola	mitochondrion, plasma membrane	64.29	67.21
CDX74925	Canola	mitochondrion, plasma membrane	63.66	66.99
PGSC0003DMT400028621	Potato	cytosol, golgi, plasma membrane	63.98	66.67
Bra005148.1-P	Field mustard	mitochondrion, plasma membrane	62.73	66.67
AT2G29525.1	Thale cress	plasma membrane	59.01	65.74
Solyc10g084990.1.1	Tomato	cytosol, golgi, mitochondrion, plasma membrane	63.66	65.71
Solyc09g011740.2.1	Tomato	cytosol, endoplasmic reticulum, plasma membrane	63.66	64.87
PGSC0003DMT400052472	Potato	plasma membrane	62.73	63.92
CDY18431	Canola	plasma membrane	40.68	56.47

Protein Annotations

EnsemblPlants:TraesCS1B01G289300.1	EnsemblPlantsGene:TraesCS1B01G289300	InterPro:Sphingomyelin_synth-like_dom	PANTHER:PTHR21290	PANTHER:PTHR21290:SF46	PFAM:PF14360
SEG:seg	TMHMM:TMhelix	MapMan:5.4.13.1	:	:	:

Description

No Description!

Coordinates

chr1B:-:504093394..504096856

Molecular Weight (calculated)

37063.4 Da

IEP (calculated)

9.540

GRAVY (calculated)

0.001

Length

322 amino acids

Sequence
(BLAST)

001: MTIYLAREAS KVWRKVCAET TTELPLLREK WPLLLAGIVF QYIHGLAARG VHYLHRPGPL LQDLGFMALP ELGQDKNYLS ECTFVFIFFS FFLWTFHPFI
101: YHSKRFYTIL IWRRVLAFLV ASQVLRIITF YSTQLPGPNY HCREGSNMAT LPPPNNVLEV LLINFPRGVN LGCGDLIFSS HMIFTLVFVR TYHKYGSKRF
201: IKLLAWVMAI VQSLLIIAAR KHYTVDVVVA WYAVNLVVFF VDTKLPEMPD RSNGSPLIPL SNKDKDGRPK DEKDVMLKDE FHKLLNGNHG DPTDRRQRVQ
301: MNGRHPEEDM SSMLSDATPN GT

Best Arabidopsis Sequence Match ( AT3G54020.1 )
(BLAST)

001: MTLYIRREAS KLWRRFCSEI TTEIGLLAEN WKYLLAGLLC QYIHGLAARG VHYIHRPGPT LQDSGFFVLP ELGQDKGFIS ETVFTCVFLS FFLWTFHPFI
101: VKSKKIYTVL IWCRVLAFLV ACQFLRVITF YSTQLPGPNY HCREGSELAR LPRPHNVLEV LLLNFPRGVI YGCGDLIFSS HMIFTLVFVR TYQKYGSKRF
201: IKLLGWVIAI LQSLLIIASR KHYTVDVVVA WYTVNLVVFF LDKKLPELPD RTTALLPVIS KDRTKEESHK LLNGNGVDPA DRRPRAQVNG KDSNGGHTDN
301: ATNGT

Arabidopsis Description

IPCS1Phosphatidylinositol:ceramide inositolphosphotransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M325]
SUBAcon: [mitochondrion,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.