Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G289300.1 | Wheat | plasma membrane | 97.83 | 97.83 |
| TraesCS1A01G280400.1 | Wheat | plasma membrane | 97.2 | 97.51 |
| HORVU1Hr1G073060.1 | Barley | plasma membrane | 96.27 | 97.18 |
| HORVU1Hr1G073040.1 | Barley | plasma membrane | 96.27 | 97.18 |
| Os05t0452900-02 | Rice | cytosol, golgi, mitochondrion, plasma membrane | 86.34 | 85.54 |
| Zm00001d038343_P001 | Maize | plasma membrane | 81.68 | 82.45 |
| EES19630 | Sorghum | cytosol, golgi, plasma membrane | 81.68 | 82.45 |
| TraesCS3D01G358200.1 | Wheat | golgi | 78.88 | 77.91 |
| GSMUA_Achr10P... | Banana | cytosol, golgi, mitochondrion, plasma membrane | 71.43 | 73.25 |
| GSMUA_Achr3P17660_001 | Banana | cytosol, golgi, mitochondrion, plasma membrane | 71.12 | 72.93 |
| AT3G54020.1 | Thale cress | mitochondrion, plasma membrane | 68.63 | 72.46 |
| GSMUA_Achr6P23620_001 | Banana | golgi | 70.19 | 72.2 |
| CDY13168 | Canola | mitochondrion, plasma membrane | 67.7 | 72.19 |
| KRH00099 | Soybean | golgi | 70.81 | 72.15 |
| CDX76176 | Canola | mitochondrion | 67.39 | 71.85 |
| KRG88789 | Soybean | cytosol, golgi, mitochondrion, plasma membrane | 69.57 | 71.34 |
| GSMUA_AchrUn_... | Banana | cytosol, golgi, mitochondrion, plasma membrane | 69.88 | 71.2 |
| Bra014848.1-P | Field mustard | mitochondrion | 66.46 | 70.86 |
| VIT_06s0004g05800.t01 | Wine grape | mitochondrion | 63.66 | 70.45 |
| KRH75771 | Soybean | cytosol, golgi, mitochondrion, peroxisome | 68.63 | 70.38 |
| VIT_08s0007g01510.t01 | Wine grape | cytosol, golgi, mitochondrion, plasma membrane | 68.94 | 70.25 |
| PGSC0003DMT400049398 | Potato | plasma membrane | 61.8 | 69.82 |
| KRH49241 | Soybean | mitochondrion | 68.63 | 69.72 |
| CDX91395 | Canola | mitochondrion, plasma membrane | 65.53 | 69.18 |
| CDX93341 | Canola | plasma membrane | 64.91 | 68.52 |
| CDY18417 | Canola | plasma membrane | 64.91 | 68.52 |
| Bra017148.1-P | Field mustard | plasma membrane | 64.91 | 68.52 |
| Solyc10g086690.1.1 | Tomato | cytosol, golgi, mitochondrion, plasma membrane | 61.8 | 67.92 |
| Bra000029.1-P | Field mustard | plasma membrane | 62.42 | 67.91 |
| AT2G37940.1 | Thale cress | mitochondrion, plasma membrane | 64.29 | 67.87 |
| CDY69104 | Canola | mitochondrion, plasma membrane | 64.91 | 67.64 |
| CDY14501 | Canola | mitochondrion, plasma membrane | 64.91 | 67.64 |
| CDY07761 | Canola | mitochondrion, plasma membrane | 64.6 | 67.53 |
| CDX74925 | Canola | mitochondrion, plasma membrane | 63.98 | 67.32 |
| Bra005148.1-P | Field mustard | mitochondrion, plasma membrane | 63.04 | 67.0 |
| PGSC0003DMT400028621 | Potato | cytosol, golgi, plasma membrane | 64.29 | 66.99 |
| AT2G29525.1 | Thale cress | plasma membrane | 58.7 | 65.4 |
| Solyc10g084990.1.1 | Tomato | cytosol, golgi, mitochondrion, plasma membrane | 63.35 | 65.38 |
| Solyc09g011740.2.1 | Tomato | cytosol, endoplasmic reticulum, plasma membrane | 63.98 | 65.19 |
| PGSC0003DMT400052472 | Potato | plasma membrane | 63.04 | 64.24 |
| CDY18431 | Canola | plasma membrane | 40.68 | 56.47 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G279500.1 | EnsemblPlantsGene:TraesCS1D01G279500 | InterPro:Sphingomyelin_synth-like_dom | PANTHER:PTHR21290 | PANTHER:PTHR21290:SF46 | PFAM:PF14360 |
| SEG:seg | TMHMM:TMhelix | MapMan:5.4.13.1 | : | : | : |
Description
No Description!
Coordinates
chr1D:-:377192084..377195426
Molecular Weight (calculated)
37072.4 Da
IEP (calculated)
9.665
GRAVY (calculated)
-0.017
Length
322 amino acids
Sequence
(BLAST)
(BLAST)
001: MTIYLAREAS KVWRKVCAET TTELPLLREK WPLLLAGIVF QYIHGLAARG VHYLHRPGPL LQDLGFMALP ELGQDKNYLS ECTFVFIFFS FFLWTFHPFI
101: YHSKRFYTIL IWRRVLAFLV ASQVLRIITF YSTQLPGPNY HCREGSNMAT LPPPNNVLEV LLINFPRGVN LGCGDLIFSS HMIFTLVFVR TYHKYGSKRF
201: IKLLAWVMAI VQSLLIIAAR KHYTVDVVVA WYAVNLVVFF VDTKLPEMPD RTNGSPLIPL SNKDKDGRPK DEKDVRLKDE FHKLLNGNHG DPTDRRQRVQ
301: MNGRHPEEDM SMLSDATPNG GT
101: YHSKRFYTIL IWRRVLAFLV ASQVLRIITF YSTQLPGPNY HCREGSNMAT LPPPNNVLEV LLINFPRGVN LGCGDLIFSS HMIFTLVFVR TYHKYGSKRF
201: IKLLAWVMAI VQSLLIIAAR KHYTVDVVVA WYAVNLVVFF VDTKLPEMPD RTNGSPLIPL SNKDKDGRPK DEKDVRLKDE FHKLLNGNHG DPTDRRQRVQ
301: MNGRHPEEDM SMLSDATPNG GT
001: MTLYIRREAS KLWRRFCSEI TTEIGLLAEN WKYLLAGLLC QYIHGLAARG VHYIHRPGPT LQDSGFFVLP ELGQDKGFIS ETVFTCVFLS FFLWTFHPFI
101: VKSKKIYTVL IWCRVLAFLV ACQFLRVITF YSTQLPGPNY HCREGSELAR LPRPHNVLEV LLLNFPRGVI YGCGDLIFSS HMIFTLVFVR TYQKYGSKRF
201: IKLLGWVIAI LQSLLIIASR KHYTVDVVVA WYTVNLVVFF LDKKLPELPD RTTALLPVIS KDRTKEESHK LLNGNGVDPA DRRPRAQVNG KDSNGGHTDN
301: ATNGT
101: VKSKKIYTVL IWCRVLAFLV ACQFLRVITF YSTQLPGPNY HCREGSELAR LPRPHNVLEV LLLNFPRGVI YGCGDLIFSS HMIFTLVFVR TYQKYGSKRF
201: IKLLGWVIAI LQSLLIIASR KHYTVDVVVA WYTVNLVVFF LDKKLPELPD RTTALLPVIS KDRTKEESHK LLNGNGVDPA DRRPRAQVNG KDSNGGHTDN
301: ATNGT
Arabidopsis Description
IPCS1Phosphatidylinositol:ceramide inositolphosphotransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M325]
SUBAcon: [mitochondrion,plasma membrane]
SUBAcon: [mitochondrion,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.