Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plasma membrane, golgi, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 2
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr11P... | |
| GSMUA_Achr2P08220_001 | |
| GSMUA_Achr4P10230_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G54020.1 | GSMUA_Achr11P... | AT2G23420.1 | 21798944 |
| AT3G54020.1 | GSMUA_Achr2P08220_001 | AT2G23420.1 | 21798944 |
| AT3G54020.1 | GSMUA_Achr4P10230_001 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P23620_001 | Banana | golgi | 86.31 | 86.58 |
| GSMUA_Achr10P... | Banana | cytosol, golgi, mitochondrion, plasma membrane | 85.67 | 85.67 |
| GSMUA_AchrUn_... | Banana | cytosol, golgi, mitochondrion, plasma membrane | 85.99 | 85.44 |
| VIT_08s0007g01510.t01 | Wine grape | cytosol, golgi, mitochondrion, plasma membrane | 74.84 | 74.37 |
| EES19630 | Sorghum | cytosol, golgi, plasma membrane | 75.48 | 74.29 |
| Zm00001d038343_P001 | Maize | plasma membrane | 75.16 | 73.98 |
| Os01t0850100-01 | Rice | cytosol, golgi, mitochondrion, plasma membrane | 76.43 | 73.62 |
| TraesCS3A01G365000.1 | Wheat | plasma membrane | 75.8 | 73.01 |
| CDY13168 | Canola | mitochondrion, plasma membrane | 69.75 | 72.52 |
| TraesCS3D01G358200.1 | Wheat | golgi | 75.16 | 72.39 |
| TraesCS3B01G396900.1 | Wheat | golgi | 75.16 | 72.39 |
| Os05t0452900-02 | Rice | cytosol, golgi, mitochondrion, plasma membrane | 74.84 | 72.31 |
| EES01758 | Sorghum | mitochondrion | 74.52 | 72.22 |
| CDX76176 | Canola | mitochondrion | 69.43 | 72.19 |
| AT3G54020.1 | Thale cress | mitochondrion, plasma membrane | 70.06 | 72.13 |
| TraesCS1B01G289300.1 | Wheat | plasma membrane | 73.89 | 72.05 |
| HORVU1Hr1G073040.1 | Barley | plasma membrane | 72.93 | 71.79 |
| HORVU1Hr1G073060.1 | Barley | plasma membrane | 72.93 | 71.79 |
| Bra014848.1-P | Field mustard | mitochondrion | 68.79 | 71.52 |
| TraesCS1D01G279500.1 | Wheat | plasma membrane | 72.93 | 71.12 |
| KRG88789 | Soybean | cytosol, golgi, mitochondrion, plasma membrane | 71.02 | 71.02 |
| TraesCS1A01G280400.1 | Wheat | plasma membrane | 72.29 | 70.72 |
| KRH00099 | Soybean | golgi | 71.02 | 70.57 |
| CDX93341 | Canola | plasma membrane | 68.47 | 70.49 |
| Bra005148.1-P | Field mustard | mitochondrion, plasma membrane | 67.83 | 70.3 |
| CDX74925 | Canola | mitochondrion, plasma membrane | 68.47 | 70.26 |
| Bra017148.1-P | Field mustard | plasma membrane | 68.15 | 70.16 |
| CDX91395 | Canola | mitochondrion, plasma membrane | 68.15 | 70.16 |
| CDY18417 | Canola | plasma membrane | 68.15 | 70.16 |
| VIT_06s0004g05800.t01 | Wine grape | mitochondrion | 64.97 | 70.1 |
| KRH75771 | Soybean | cytosol, golgi, mitochondrion, peroxisome | 70.06 | 70.06 |
| Bra000029.1-P | Field mustard | plasma membrane | 65.92 | 69.93 |
| CDY69104 | Canola | mitochondrion, plasma membrane | 68.79 | 69.9 |
| CDY14501 | Canola | mitochondrion, plasma membrane | 68.79 | 69.9 |
| AT2G37940.1 | Thale cress | mitochondrion, plasma membrane | 67.83 | 69.84 |
| Zm00001d012380_P002 | Maize | plasma membrane | 71.97 | 69.75 |
| KRH49241 | Soybean | mitochondrion | 70.06 | 69.4 |
| CDY07761 | Canola | mitochondrion, plasma membrane | 67.83 | 69.16 |
| PGSC0003DMT400049398 | Potato | plasma membrane | 62.74 | 69.12 |
| Solyc10g084990.1.1 | Tomato | cytosol, golgi, mitochondrion, plasma membrane | 66.24 | 66.67 |
| PGSC0003DMT400028621 | Potato | cytosol, golgi, plasma membrane | 65.61 | 66.67 |
| Solyc10g086690.1.1 | Tomato | cytosol, golgi, mitochondrion, plasma membrane | 61.78 | 66.21 |
| Zm00001d042851_P003 | Maize | golgi, plasma membrane, plastid | 74.84 | 66.2 |
| AT2G29525.1 | Thale cress | plasma membrane | 60.83 | 66.09 |
| Solyc09g011740.2.1 | Tomato | cytosol, endoplasmic reticulum, plasma membrane | 64.01 | 63.61 |
| PGSC0003DMT400052472 | Potato | plasma membrane | 63.38 | 62.97 |
| HORVU3Hr1G085630.8 | Barley | plastid | 66.24 | 59.09 |
| CDY18431 | Canola | plasma membrane | 42.99 | 58.19 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P17660_001 | EnsemblPlants:GSMUA_Achr3T17660_001 | EnsemblPlantsGene:GSMUA_Achr3G17660_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Sphingomyelin_synth-like_dom | PANTHER:PTHR21290 | PANTHER:PTHR21290:SF46 | PFAM:PF14360 | TMHMM:TMhelix | UniParc:UPI000295BC4C |
| UniProt:M0SFI2 | MapMan:5.4.13.1 | : | : | : | : |
Description
phosphatidic acid phosphatase-related, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G17660_001]
Coordinates
chr3:-:19171511..19175718
Molecular Weight (calculated)
36043.3 Da
IEP (calculated)
9.917
GRAVY (calculated)
0.152
Length
314 amino acids
Sequence
(BLAST)
(BLAST)
001: MPLYIAREAS KLWRKVCMET SVELQLLMEK WRLLLAGIIF QYIHGLAARG VHYLHRPGPT LQDLGFMILP ELGKERGYIS ESLFTFVFVS FALWTFHPFV
101: YHSKRFYTVL LWLRVLAFLV ASQVLRIITF YSTQLPGPNY HCREGSELAR LPAPKSVTEV LLINFPHGVI YGCGDLIFSS HMIFTLVFVL TYNKYGSKRF
201: IKFLAWVIAI VQSLLIVASR KHYTVDIVVA WYTVNLVVFF IDKKLPEMPD RSSGSQPLLP LNVKEKDGKF REDHRKLLNG NTVDAADWRQ RVQVNGKHGE
301: DGNHIHSNSV VSGT
101: YHSKRFYTVL LWLRVLAFLV ASQVLRIITF YSTQLPGPNY HCREGSELAR LPAPKSVTEV LLINFPHGVI YGCGDLIFSS HMIFTLVFVL TYNKYGSKRF
201: IKFLAWVIAI VQSLLIVASR KHYTVDIVVA WYTVNLVVFF IDKKLPEMPD RSSGSQPLLP LNVKEKDGKF REDHRKLLNG NTVDAADWRQ RVQVNGKHGE
301: DGNHIHSNSV VSGT
001: MTLYIRREAS KLWRRFCSEI TTEIGLLAEN WKYLLAGLLC QYIHGLAARG VHYIHRPGPT LQDSGFFVLP ELGQDKGFIS ETVFTCVFLS FFLWTFHPFI
101: VKSKKIYTVL IWCRVLAFLV ACQFLRVITF YSTQLPGPNY HCREGSELAR LPRPHNVLEV LLLNFPRGVI YGCGDLIFSS HMIFTLVFVR TYQKYGSKRF
201: IKLLGWVIAI LQSLLIIASR KHYTVDVVVA WYTVNLVVFF LDKKLPELPD RTTALLPVIS KDRTKEESHK LLNGNGVDPA DRRPRAQVNG KDSNGGHTDN
301: ATNGT
101: VKSKKIYTVL IWCRVLAFLV ACQFLRVITF YSTQLPGPNY HCREGSELAR LPRPHNVLEV LLLNFPRGVI YGCGDLIFSS HMIFTLVFVR TYQKYGSKRF
201: IKLLGWVIAI LQSLLIIASR KHYTVDVVVA WYTVNLVVFF LDKKLPELPD RTTALLPVIS KDRTKEESHK LLNGNGVDPA DRRPRAQVNG KDSNGGHTDN
301: ATNGT
Arabidopsis Description
IPCS1Phosphatidylinositol:ceramide inositolphosphotransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M325]
SUBAcon: [mitochondrion,plasma membrane]
SUBAcon: [mitochondrion,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.