Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- golgi 2
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY18417 | Canola | plasma membrane | 95.08 | 95.08 |
| CDX74925 | Canola | mitochondrion, plasma membrane | 95.08 | 94.77 |
| Bra017148.1-P | Field mustard | plasma membrane | 94.75 | 94.75 |
| CDX93341 | Canola | plasma membrane | 94.75 | 94.75 |
| Bra005148.1-P | Field mustard | mitochondrion, plasma membrane | 94.1 | 94.72 |
| CDX91395 | Canola | mitochondrion, plasma membrane | 94.43 | 94.43 |
| CDY14501 | Canola | mitochondrion, plasma membrane | 94.75 | 93.53 |
| CDY69104 | Canola | mitochondrion, plasma membrane | 94.75 | 93.53 |
| Bra000029.1-P | Field mustard | plasma membrane | 90.49 | 93.24 |
| CDY07761 | Canola | mitochondrion, plasma membrane | 94.1 | 93.18 |
| AT3G54020.1 | Thale cress | mitochondrion, plasma membrane | 85.57 | 85.57 |
| KRG88789 | Soybean | cytosol, golgi, mitochondrion, plasma membrane | 78.36 | 76.11 |
| VIT_08s0007g01510.t01 | Wine grape | cytosol, golgi, mitochondrion, plasma membrane | 78.36 | 75.63 |
| KRH75771 | Soybean | cytosol, golgi, mitochondrion, peroxisome | 77.7 | 75.48 |
| Zm00001d046198_P001 | Maize | endoplasmic reticulum, plasma membrane | 11.8 | 75.0 |
| PGSC0003DMT400049398 | Potato | plasma membrane | 69.84 | 74.74 |
| CDY18431 | Canola | plasma membrane | 56.72 | 74.57 |
| PGSC0003DMT400028621 | Potato | cytosol, golgi, plasma membrane | 75.41 | 74.43 |
| KRH00099 | Soybean | golgi | 76.72 | 74.05 |
| Solyc09g011740.2.1 | Tomato | cytosol, endoplasmic reticulum, plasma membrane | 76.07 | 73.42 |
| KRH49241 | Soybean | mitochondrion | 75.74 | 72.87 |
| PGSC0003DMT400052472 | Potato | plasma membrane | 75.41 | 72.78 |
| Solyc10g084990.1.1 | Tomato | cytosol, golgi, mitochondrion, plasma membrane | 74.1 | 72.44 |
| Solyc10g086690.1.1 | Tomato | cytosol, golgi, mitochondrion, plasma membrane | 69.18 | 72.01 |
| Zm00001d038343_P001 | Maize | plasma membrane | 71.15 | 68.03 |
| EES19630 | Sorghum | cytosol, golgi, plasma membrane | 71.15 | 68.03 |
| GSMUA_Achr3P17660_001 | Banana | cytosol, golgi, mitochondrion, plasma membrane | 69.84 | 67.83 |
| GSMUA_Achr6P23620_001 | Banana | golgi | 69.51 | 67.73 |
| GSMUA_AchrUn_... | Banana | cytosol, golgi, mitochondrion, plasma membrane | 70.16 | 67.72 |
| GSMUA_Achr10P... | Banana | cytosol, golgi, mitochondrion, plasma membrane | 69.18 | 67.2 |
| Os05t0287800-01 | Rice | mitochondrion | 68.52 | 66.77 |
| Zm00001d041608_P001 | Maize | mitochondrion, plasma membrane | 67.87 | 66.13 |
| Os01t0850100-01 | Rice | cytosol, golgi, mitochondrion, plasma membrane | 70.49 | 65.95 |
| KXG23698 | Sorghum | mitochondrion | 67.54 | 65.81 |
| Zm00001d030613_P003 | Maize | mitochondrion, plasma membrane | 67.54 | 65.81 |
| HORVU1Hr1G073060.1 | Barley | plasma membrane | 68.52 | 65.52 |
| HORVU1Hr1G073040.1 | Barley | plasma membrane | 68.52 | 65.52 |
| TraesCS3A01G365000.1 | Wheat | plasma membrane | 69.84 | 65.34 |
| TraesCS3B01G396900.1 | Wheat | golgi | 69.84 | 65.34 |
| TraesCS3D01G358200.1 | Wheat | golgi | 69.51 | 65.03 |
| EES01758 | Sorghum | mitochondrion | 68.85 | 64.81 |
| Os05t0452900-02 | Rice | cytosol, golgi, mitochondrion, plasma membrane | 68.85 | 64.62 |
| TraesCS1D01G279500.1 | Wheat | plasma membrane | 67.87 | 64.29 |
| TraesCS1B01G289300.1 | Wheat | plasma membrane | 67.54 | 63.98 |
| Zm00001d012380_P002 | Maize | plasma membrane | 67.87 | 63.89 |
| AT2G29525.1 | Thale cress | plasma membrane | 60.0 | 63.32 |
| TraesCS1A01G280400.1 | Wheat | plasma membrane | 66.56 | 63.24 |
| Zm00001d042851_P003 | Maize | golgi, plasma membrane, plastid | 69.18 | 59.44 |
| HORVU3Hr1G085630.8 | Barley | plastid | 64.59 | 55.97 |
Protein Annotations
| MapMan:5.4.13.1 | EntrezGene:818371 | UniProt:A0A178VV03 | ProteinID:AEC09468.1 | EMBL:AF325083 | EMBL:AK317636 |
| ProteinID:ANM62302.1 | ArrayExpress:AT2G37940 | EnsemblPlantsGene:AT2G37940 | RefSeq:AT2G37940 | TAIR:AT2G37940 | RefSeq:AT2G37940-TAIR-G |
| EnsemblPlants:AT2G37940.1 | TAIR:AT2G37940.1 | EMBL:AY058059 | EMBL:AY090297 | Symbol:AtIPCS2 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 |
| GO:GO:0005802 | GO:GO:0006629 | GO:GO:0006665 | GO:GO:0006950 | GO:GO:0006952 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016740 |
| GO:GO:0030148 | GO:GO:0045140 | RefSeq:NP_001324467.1 | RefSeq:NP_565875.1 | ProteinID:OAP09654.1 | PFAM:PF14360 |
| PO:PO:0000013 | PO:PO:0000014 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009001 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR21290 | PANTHER:PTHR21290:SF33 | UniProt:Q9SH93 | InterPro:Sphingomyelin_synth-like_dom |
| TMHMM:TMhelix | UniParc:UPI000009D3EF | : | : | : | : |
Description
IPCS2ERH1 [Source:UniProtKB/TrEMBL;Acc:A0A178VV03]
Coordinates
chr2:+:15876718..15880073
Molecular Weight (calculated)
34997.9 Da
IEP (calculated)
9.636
GRAVY (calculated)
0.106
Length
305 amino acids
Sequence
(BLAST)
(BLAST)
001: MTLYIRRESS KLWKRFCSEI STEIGLLAEN WKYLLAGLIC QYIHGLAAKG VHYIHRPGPT LQDLGFFLLP ELGQERSYIS ETVFTSVFLS FFLWTFHPFI
101: LKTKKIYTVL IWCRVLAFLV ACQFLRVITF YSTQLPGPNY HCREGSKVSR LPWPKSALEV LEINPHGVMY GCGDLIFSSH MIFTLVFVRT YQKYGTKRFI
201: KLFGWLTAIV QSLLIIASRK HYSVDVVVAW YTVNLVVFCL DKKLPELPDR TAVLLPVISK DRTKEENHKL LNGNGVDPAD WRPRAQVNGK IDSNGVHTDN
301: TMNGA
101: LKTKKIYTVL IWCRVLAFLV ACQFLRVITF YSTQLPGPNY HCREGSKVSR LPWPKSALEV LEINPHGVMY GCGDLIFSSH MIFTLVFVRT YQKYGTKRFI
201: KLFGWLTAIV QSLLIIASRK HYSVDVVVAW YTVNLVVFCL DKKLPELPDR TAVLLPVISK DRTKEENHKL LNGNGVDPAD WRPRAQVNGK IDSNGVHTDN
301: TMNGA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.