Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- golgi 2
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G54020.1 | KXG26318 | AT2G23420.1 | 21798944 |
| AT3G54020.1 | OQU90665 | AT2G23420.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d041608_P001 | Maize | mitochondrion, plasma membrane | 98.08 | 98.08 |
| Zm00001d030613_P003 | Maize | mitochondrion, plasma membrane | 94.25 | 94.25 |
| Zm00001d046198_P001 | Maize | endoplasmic reticulum, plasma membrane | 13.74 | 89.58 |
| Os05t0287800-01 | Rice | mitochondrion | 87.54 | 87.54 |
| VIT_08s0007g01510.t01 | Wine grape | cytosol, golgi, mitochondrion, plasma membrane | 71.25 | 70.57 |
| CDX76176 | Canola | mitochondrion | 67.09 | 69.54 |
| CDY13168 | Canola | mitochondrion, plasma membrane | 67.09 | 69.54 |
| Bra014848.1-P | Field mustard | mitochondrion | 66.77 | 69.21 |
| VIT_06s0004g05800.t01 | Wine grape | mitochondrion | 64.22 | 69.07 |
| AT3G54020.1 | Thale cress | mitochondrion, plasma membrane | 67.09 | 68.85 |
| EES19630 | Sorghum | cytosol, golgi, plasma membrane | 69.97 | 68.65 |
| KRH00099 | Soybean | golgi | 69.01 | 68.35 |
| KRG88789 | Soybean | cytosol, golgi, mitochondrion, plasma membrane | 68.37 | 68.15 |
| PGSC0003DMT400049398 | Potato | plasma membrane | 61.98 | 68.07 |
| AT2G37940.1 | Thale cress | mitochondrion, plasma membrane | 65.81 | 67.54 |
| Bra000029.1-P | Field mustard | plasma membrane | 63.58 | 67.23 |
| KRH75771 | Soybean | cytosol, golgi, mitochondrion, peroxisome | 67.41 | 67.2 |
| KRH49241 | Soybean | mitochondrion | 68.05 | 67.19 |
| EES01758 | Sorghum | mitochondrion | 68.37 | 66.05 |
| PGSC0003DMT400028621 | Potato | cytosol, golgi, plasma membrane | 65.18 | 66.02 |
| CDY07761 | Canola | mitochondrion, plasma membrane | 64.86 | 65.91 |
| CDY18417 | Canola | plasma membrane | 64.22 | 65.9 |
| Bra017148.1-P | Field mustard | plasma membrane | 64.22 | 65.9 |
| Solyc10g084990.1.1 | Tomato | cytosol, golgi, mitochondrion, plasma membrane | 65.5 | 65.71 |
| CDX93341 | Canola | plasma membrane | 63.9 | 65.57 |
| Solyc10g086690.1.1 | Tomato | cytosol, golgi, mitochondrion, plasma membrane | 61.34 | 65.53 |
| CDY69104 | Canola | mitochondrion, plasma membrane | 64.54 | 65.37 |
| CDY14501 | Canola | mitochondrion, plasma membrane | 64.54 | 65.37 |
| CDX74925 | Canola | mitochondrion, plasma membrane | 63.58 | 65.03 |
| Bra005148.1-P | Field mustard | mitochondrion, plasma membrane | 62.62 | 64.69 |
| CDX91395 | Canola | mitochondrion, plasma membrane | 62.94 | 64.59 |
| AT2G29525.1 | Thale cress | plasma membrane | 59.42 | 64.36 |
| Solyc09g011740.2.1 | Tomato | cytosol, endoplasmic reticulum, plasma membrane | 64.22 | 63.61 |
| PGSC0003DMT400052472 | Potato | plasma membrane | 63.58 | 62.97 |
| CDY18431 | Canola | plasma membrane | 39.62 | 53.45 |
Protein Annotations
| EnsemblPlants:KXG23698 | EnsemblPlantsGene:SORBI_3008G129000 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:Sphingomyelin_synth-like_dom |
| PANTHER:PTHR21290 | PANTHER:PTHR21290:SF33 | PFAM:PF14360 | ProteinID:KXG23698 | ProteinID:KXG23698.1 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI0001C807BD | UniProt:A0A1B6PDD8 | MapMan:5.4.13.1 | : | : |
Description
hypothetical protein
Coordinates
chr8:+:55504479..55507896
Molecular Weight (calculated)
35724.8 Da
IEP (calculated)
9.957
GRAVY (calculated)
0.123
Length
313 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPFYLARGA SKLVRRITSE TSVELKILSD KWRLLLAGLI FQYIHGLAAH GVHYLHRPGP TLQDLGFMIL PELGKERGYI SETLFTFIFL TFVLWTFHPF
101: ILQTKRFYTV LIWRRVLAFL CASQFLRIIT FYATQLPGPN YHCREGSPLA RLPPPQNAAE VFLINFPKGV IYGCGDLIFS SHMIFTLVFV ITYQKYGSIR
201: FCKMLAWCIA VAQSLLIISS RKHYSVDVVV AWYTVNLVVF FVDKKLTELP DRSVGSTSVL PVSTKDKDTK LKEENTRLLN GNSMDSADRR PRTQMNGKQI
301: ENESHVGSET VKT
101: ILQTKRFYTV LIWRRVLAFL CASQFLRIIT FYATQLPGPN YHCREGSPLA RLPPPQNAAE VFLINFPKGV IYGCGDLIFS SHMIFTLVFV ITYQKYGSIR
201: FCKMLAWCIA VAQSLLIISS RKHYSVDVVV AWYTVNLVVF FVDKKLTELP DRSVGSTSVL PVSTKDKDTK LKEENTRLLN GNSMDSADRR PRTQMNGKQI
301: ENESHVGSET VKT
001: MTLYIRREAS KLWRRFCSEI TTEIGLLAEN WKYLLAGLLC QYIHGLAARG VHYIHRPGPT LQDSGFFVLP ELGQDKGFIS ETVFTCVFLS FFLWTFHPFI
101: VKSKKIYTVL IWCRVLAFLV ACQFLRVITF YSTQLPGPNY HCREGSELAR LPRPHNVLEV LLLNFPRGVI YGCGDLIFSS HMIFTLVFVR TYQKYGSKRF
201: IKLLGWVIAI LQSLLIIASR KHYTVDVVVA WYTVNLVVFF LDKKLPELPD RTTALLPVIS KDRTKEESHK LLNGNGVDPA DRRPRAQVNG KDSNGGHTDN
301: ATNGT
101: VKSKKIYTVL IWCRVLAFLV ACQFLRVITF YSTQLPGPNY HCREGSELAR LPRPHNVLEV LLLNFPRGVI YGCGDLIFSS HMIFTLVFVR TYQKYGSKRF
201: IKLLGWVIAI LQSLLIIASR KHYTVDVVVA WYTVNLVVFF LDKKLPELPD RTTALLPVIS KDRTKEESHK LLNGNGVDPA DRRPRAQVNG KDSNGGHTDN
301: ATNGT
Arabidopsis Description
IPCS1Phosphatidylinositol:ceramide inositolphosphotransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M325]
SUBAcon: [mitochondrion,plasma membrane]
SUBAcon: [mitochondrion,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.